Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4n24
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0541 + 18437075-18440062                                         28   3.6  
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973...    27   4.7  
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335           27   6.2  
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562...    27   6.2  
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472...    27   8.2  
05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001     27   8.2  

>09_04_0541 + 18437075-18440062
          Length = 995

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 116 VWSLHCKTELQCGAYCSSAPQIYSFYYTIES*LLLLQ 6
           +W    KT L CG +C  APQ       +ES LLL++
Sbjct: 745 LWGESLKTALLCGTHCFLAPQAKK--AEVESSLLLVK 779


>03_05_0787 +
           27696347-27696708,27696851-27696857,27697066-27697371,
           27697454-27697873
          Length = 364

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 170 VNGLSSAV-IHPASQPVGPGVD 232
           V+GL+S V  HPASQP  P VD
Sbjct: 253 VDGLTSFVPTHPASQPTNPIVD 274


>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
          Length = 377

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 76  RIALQHPKSIHFITQSNHS 20
           RI +QHP  IHF TQ + S
Sbjct: 335 RIPIQHPNQIHFSTQIHPS 353


>01_07_0341 -
           42855667-42855849,42855933-42855981,42856165-42856219,
           42856290-42856410,42856495-42856532,42856612-42856675,
           42856778-42856885,42857066-42857187,42857544-42857616,
           42857700-42857776,42858521-42858632
          Length = 333

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 135 KLGLSFCVEPSL*NRVAMRSVLLFSTPNLFI 43
           KLG +   +P L N V   ++L+F TP+ F+
Sbjct: 73  KLGANVIADPDLENAVKDANMLVFVTPHQFV 103


>06_03_0092 +
           16546204-16546693,16546958-16547028,16547145-16547221,
           16547322-16547469,16550080-16550148,16550348-16550509,
           16550625-16550785,16551240-16551324,16552068-16552144,
           16552234-16552441,16555844-16555921,16556463-16556591,
           16556665-16556808,16556893-16557038,16557137-16557293,
           16557391-16557449,16557582-16557741,16557849-16557998,
           16558093-16558229,16558325-16558471,16558556-16558657,
           16558742-16558799,16558895-16558996,16559729-16559766,
           16559868-16559994,16560075-16560245,16560334-16560465,
           16560577-16560686,16560866-16560926,16561031-16561208,
           16561293-16561498,16561590-16561709,16561903-16562001,
           16562152-16562370,16562701-16562840,16563175-16563286,
           16563375-16563425,16563509-16563589,16563683-16563853,
           16563934-16564089,16564174-16564380,16565145-16565215,
           16565315-16565414,16565783-16565839,16566156-16566212,
           16566308-16566388,16566467-16566606,16566641-16566764
          Length = 2041

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 124 FVLCGAFTVKPSCNAERIALQHPKSIHFITQSN 26
           ++LC A    P    E+  L +PK+ H++ QSN
Sbjct: 799 YLLCAA----PQEEVEKYKLGNPKTFHYLNQSN 827


>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
          Length = 708

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 72  IRSALQLGFTVKAPHKTKVLVFLRLQQIRRFLK-SMD*VAPSFIQLHNLWAPVWIQKKTG 248
           +R+AL     V   H    L    L+     L+   D  A S   LH L+AP+  +   G
Sbjct: 512 MRAALSAARGVAHLHAAHSLAHGNLKSSNLLLRPDPDATALSDYCLHQLFAPLSARPNAG 571

Query: 249 AYKVPE 266
            Y+ PE
Sbjct: 572 GYRAPE 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,891
Number of Sequences: 37544
Number of extensions: 215117
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)