Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4n24
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-33|AAK68575.1| 83|Caenorhabditis elegans Hypothetical... 32 0.19
Z81039-4|CAB02776.1| 361|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 27 5.5
L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy c... 26 9.7
L17337-3|AAA28222.1| 331|Caenorhabditis elegans Hypothetical pr... 26 9.7
L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated p... 26 9.7
AL023845-2|CAA19538.1| 334|Caenorhabditis elegans Hypothetical ... 26 9.7
AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical ... 26 9.7
AC024785-6|AAF60605.2| 467|Caenorhabditis elegans C-type lectin... 26 9.7
AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy... 26 9.7
>AC084158-33|AAK68575.1| 83|Caenorhabditis elegans Hypothetical
protein Y69A2AR.3 protein.
Length = 83
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 252 YKVPEYFCYDNVSFFEAEIEMAKYRLPQPS 341
YK EY +D S+ AEI M K R+ QPS
Sbjct: 42 YKCDEYLKFDKYSYAHAEITMNKDRVVQPS 71
>Z81039-4|CAB02776.1| 361|Caenorhabditis elegans Hypothetical
protein C25D7.5 protein.
Length = 361
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 282 YHNRNILELCTLRFFFGSTPGPT 214
+ +ILELC+ STPGPT
Sbjct: 199 FEKHSILELCSPNSLIQSTPGPT 221
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 270 FCYDNVSFFEAEIEMAKYRLPQPS 341
F Y+NV++ +AE Y P+P+
Sbjct: 1521 FSYENVAYTQAEFSSTTYACPEPT 1544
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 270 FCYDNVSFFEAEIEMAKYRLPQPS 341
F Y+NV++ +AE Y P+P+
Sbjct: 1521 FSYENVAYTQAEFSSTTYACPEPT 1544
>L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy
chain protein.
Length = 815
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 174 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLF 64
LT + E +GG + + C PS N +S LLF
Sbjct: 286 LTRILQESLGGNSRTTVIICASPSHFNEAETKSTLLF 322
>L17337-3|AAA28222.1| 331|Caenorhabditis elegans Hypothetical
protein ZK686.3 protein.
Length = 331
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 217 GPRCGSKKKPERTKFQ 264
GP+ G+KK+PE+ FQ
Sbjct: 122 GPKLGAKKRPEQMDFQ 137
>L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated
protein 116 protein.
Length = 815
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 174 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLF 64
LT + E +GG + + C PS N +S LLF
Sbjct: 286 LTRILQESLGGNSRTTVIICASPSHFNEAETKSTLLF 322
>AL023845-2|CAA19538.1| 334|Caenorhabditis elegans Hypothetical
protein Y51B9A.4 protein.
Length = 334
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 309 QFQLRRSSHYHNRNILELCTL 247
+F+L + SHYH+R LC+L
Sbjct: 198 RFELIQQSHYHSRPQKSLCSL 218
>AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical
protein C03H5.6 protein.
Length = 530
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 339 KVVAIGTSPSQFQLRRSSHYHNRNILELCTLRFFFGSTPGPTGCEAG 199
K+V + + P F +RR+ ++ N +E RF F S P E G
Sbjct: 395 KIVTMTSIPKAFNIRRTQNFDFENKIE----RFRFFSDPNKIDSEPG 437
>AC024785-6|AAF60605.2| 467|Caenorhabditis elegans C-type lectin
protein 74 protein.
Length = 467
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/40 (20%), Positives = 23/40 (57%)
Frame = -3
Query: 418 FLVQLYLLNYYITSNIKQIKIYFLRAEGCGNRYFAISISA 299
+L+ L + ++ T+N+K +++Y+ YF + +++
Sbjct: 374 YLLSLSIQSHVPTNNVKDVELYWRNPSSTNTGYFGMPVAS 413
>AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy
chain protein.
Length = 815
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 174 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLF 64
LT + E +GG + + C PS N +S LLF
Sbjct: 286 LTRILQESLGGNSRTTVIICASPSHFNEAETKSTLLF 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,951,295
Number of Sequences: 27780
Number of extensions: 199926
Number of successful extensions: 448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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