Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4n11
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.94 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.8  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   8.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 226 SADSVQQGSIPG-SIRADSV*ELRCRHRSGWKTSGTGSVGYR 348
           +A S   G  P  +I ADS  EL  R R G+K +G   + Y+
Sbjct: 168 TAASTVLGFFPALNIVADSFIELIRRQRVGYKVTGFEELAYK 209


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 603 LWLKRLTRL-HIWNALPKARKVYVRCLKQQPEPHYRSR 713
           L L RL RL  +   + +  +VY+  L QQPE HY  R
Sbjct: 214 LSLVRLLRLSRLVRYVSQWEEVYIP-LYQQPERHYERR 250


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 506  LVGNKKDLRNDPATINELRKMKQEPVKPQEGRAMAE 613
            +V +++ +  DP+     R    +P   Q+G+A A+
Sbjct: 978  VVQSQQPIMTDPSPFKRGRYTPPQPANAQQGQAQAQ 1013


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 216 PHAPSPTITNFLRIAAIGPELAEEEHHHIVPS 121
           P  P PT+T+    +A  P   + + H+ VP+
Sbjct: 181 PEPPVPTVTSACVGSAYTPLKEDHDDHYGVPT 212


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 308 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 409
           V G  +E   W+ A +E  D LR    PD  +++
Sbjct: 542 VAGYPIEEIKWERANRELPDDLRQKVLPDGTLVI 575


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 308 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 409
           V G  +E   W+ A +E  D LR    PD  +++
Sbjct: 542 VAGYPIEEIKWERANRELPDDLRQKVLPDGTLVI 575


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 309 WMENKWNWLCGIPLAKKIT 365
           W+ N W   C    AKK+T
Sbjct: 83  WLHNIWRPDCFFKNAKKVT 101


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = +2

Query: 572 QEPVKPQEGRAMAEKINAF 628
           ++P++PQ+  ++ EK+  +
Sbjct: 102 EDPIQPQQAASVVEKLGDY 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,351
Number of Sequences: 438
Number of extensions: 4288
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)