Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4n06
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 31 0.11
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 0.98
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 28 0.98
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 28 1.3
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 27 1.7
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 27 1.7
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 4.0
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 4.0
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 25 6.9
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 25 6.9
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 6.9
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 25 9.1
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 9.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 9.1
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 31.5 bits (68), Expect = 0.11
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 64 KRPSDPVTIESVKENWSKVVDMRGAKH-LEKIADVTLELVDKLQEFEERSKLDGDKDSYW 240
KRP++P + S N+S + H +EK+ D+ L+ L++ D ++ W
Sbjct: 432 KRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQALRKASTLETTDQEQIDTW 491
Query: 241 TTYDYNAKDLVIYALGVGASVE 306
T + + AL + S+E
Sbjct: 492 KTTLSEKLESIWKALYINESLE 513
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 0.98
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Frame = -2
Query: 509 TPSVPGKSPTNSMYC--------SP*STLVKSANLPGGMALATIGASMHIPASMKNEGKG 354
TPS P KS +S + +P S SA +PGG A I A+ IP S
Sbjct: 497 TPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGGKKSA-IEAAAPIPTSADTVESK 555
Query: 353 EKFSWLS*RNFKSVGFSTEAPTPRA*MTK 267
S S G +T PTP + TK
Sbjct: 556 HAAGSGSATTIPSPGSATTKPTPGSATTK 584
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 28.3 bits (60), Expect = 0.98
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 301 VENPTDLKFLYESHENFSPL--PSFFILAGMCMEAP 402
+EN +DL+ LYE+ N PL PS+F +C+ P
Sbjct: 177 IENNSDLETLYENIHNVLPLITPSYFFTL-LCLILP 211
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 401 RSLLTPCRRA-NSLISLMCFTESSTLNSSVTSLAPRESSQPVVTLSI 538
RS L P R A NSL SL + + SS +S P + P++T ++
Sbjct: 712 RSFLVPSRDARNSLTSLSLHSNVAKNKSSHSSKWPTHTLSPIITTAL 758
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 304 ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGEQYIE 477
ENP K +Y+ H N P S +P+ N +P GK +T V+ + +E
Sbjct: 206 ENPFLKKIIYDIHHNIYPSTS------PNPTSPVTLNRLPLGKKDSYTLVIASNKLLE 257
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 304 ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGEQYIE 477
ENP K +Y+ H N P S +P+ N +P GK +T V+ + +E
Sbjct: 206 ENPFLKKIIYDIHHNIYPSTS------PNPTSPVTLNRLPLGKKDSYTLVIASNKLLE 257
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.2 bits (55), Expect = 4.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 154 SSPNVWRLSCPRLWTN 107
S+PN W + PR+W+N
Sbjct: 1124 STPNNWEVWAPRVWSN 1139
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 76 DPVTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDSYWTTY-- 249
DP E VKE+ +++ + +E I D+ L + + E +DG D+ T Y
Sbjct: 445 DPEFCELVKESADRILQRQETDTIELIDDIRYFLSKRFGIYHEDLCIDGVVDTL-TPYES 503
Query: 250 DYNAK 264
+YN K
Sbjct: 504 EYNQK 508
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 229 DSYWTTYDYNAKDLVIYALGVGASVENPTDLKFL 330
D W+ + YN K I L GAS+E D KF+
Sbjct: 454 DPNWSNFLYNGKTKKIELLDFGASIE--YDEKFI 485
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 91 ESVKENWSKVVDMRGAKHLEKIADVTLELVDKL 189
ESV EN ++ + A+HLE +AD +L+ + K+
Sbjct: 373 ESVDENANRKSKVL-AQHLELLADCSLKFISKI 404
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -1
Query: 549 LVQDIDNVTTGCEDSLGAREVTDEFNVLLSVKHISEISEFARRHGVSNDRGLHA 388
LV+++D V GC + + + +FN+ + V S ++ ++ H + + L A
Sbjct: 757 LVENLDLVKNGCSNMVKHIQNCHKFNIPVVVAINSYKTDSSKEHEIIREAALQA 810
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 165 DICDLLQMFGASHVHDFG 112
D D MFG HV+DFG
Sbjct: 123 DTSDSNYMFGLKHVYDFG 140
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 593 FWNISLFTMATALEPLSRISTT*QRVVKTP 504
F+ + F AL+P +R+S T +RV +P
Sbjct: 280 FFIVVYFIFGYALKPAARVSRTGRRVFSSP 309
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 26 KHNYLGAMEPHSRRD--LQTRSRSNRSKRIGPKSWT*EAP 139
K N L +E + + LQT SR + +G SWT + P
Sbjct: 29 KKNSLDPIEKNKQETAGLQTTSRPTAKQLVGGSSWTGKIP 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,872
Number of Sequences: 5004
Number of extensions: 59801
Number of successful extensions: 195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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