Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4n06
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0151 - 21237677-21237704,21237759-21237829,21238101-212382... 40 0.002
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 33 0.19
03_06_0241 - 32587492-32587581,32587673-32587750,32588502-32589422 32 0.33
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 32 0.44
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 29 3.1
01_01_0137 + 1249081-1249341,1249500-1250237 29 3.1
06_03_0943 - 26191798-26192244,26192802-26192966,26193515-261936... 29 4.1
10_01_0238 + 2496974-2497618,2497738-2497980,2498202-2499211,249... 28 5.4
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551... 28 5.4
08_02_0212 + 14342316-14342686,14343471-14343521,14345812-14346940 28 5.4
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 28 5.4
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099 28 5.4
05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222... 28 5.4
02_01_0091 + 646299-649082 28 5.4
11_06_0611 + 25461469-25461655,25461670-25462238 28 7.1
09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963... 28 7.1
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996... 28 7.1
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 23 7.4
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 27 9.4
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 27 9.4
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 27 9.4
>09_06_0151 -
21237677-21237704,21237759-21237829,21238101-21238281,
21238369-21238441,21239033-21239072,21239818-21239890,
21240075-21240151,21241033-21241138,21241256-21241278,
21241369-21241440
Length = 247
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Frame = +1
Query: 244 TYDYNAKDLVIYALGVGASVENPTDLKFLY-----ESHENFSPLPSFFILAGMCMEAPIV 408
++ Y+ +D+ +YALGVGA + D K L+ + + LP+F L + +
Sbjct: 26 SFAYDERDVALYALGVGACGADAIDEKELHLVYHRDGQPHIKALPTFASLFPF-KNSNGL 84
Query: 409 ANAMPPGKFADFTNVLHGEQYIEFVGDFPGTEGVFTTRCYVVDILDKGSSAVAIV--NSE 582
PG D + +LHG+ YIE V + + + DKG + + + +
Sbjct: 85 GIVDVPGLNFDASLLLHGQHYIEIYKPIHSRANV-VNKTKIAGLHDKGKATILEIETTTH 143
Query: 583 IFQNKQLVCRTQQHIFV 633
+ + +++C + I++
Sbjct: 144 VKDSGEVLCMNRSTIYL 160
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 25 KAQLFRSNGAPLKKRPSDPVTIESVKENWSKVVDMRGAKHLEKIADV 165
K + R P+K P DP T E+++ + KVV ++ A+ + I+ +
Sbjct: 174 KIEKERDKDIPIKTEPKDPYTTEAIQSSRDKVVVLQAARAIVSISHI 220
>03_06_0241 - 32587492-32587581,32587673-32587750,32588502-32589422
Length = 362
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 38 LGAMEPHSRRDLQTRSRSNRSKRIGPKSWT*EAPNIWRR 154
+G P SRR ++ R + RS + PK+W EAP + RR
Sbjct: 4 IGDPSPSSRRSVKRRPPA-RSPELSPKAWGGEAPELIRR 41
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 31.9 bits (69), Expect = 0.44
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = +1
Query: 25 KAQLFR--SNGAPLKKRPSDPVTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEF 198
KA+L+R G K+R + V + KEN + MR AK L+ A+ + K+QE
Sbjct: 372 KAKLYRFDKEGNQWKERGTGTVKLLKHKENGKVRLVMRQAKTLKICANHLVASTTKMQE- 430
Query: 199 EERSKLDGDKDSYWTTYDYNAKDL--VIYALGVGASVENPTDLKFLYE 336
DK W D+ +L ++A+ G SVEN K L E
Sbjct: 431 ----HAGSDKSCVWHAADFADGELKEEMFAIRFG-SVENCKKFKDLVE 473
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 148 EKIADVTLEL-VDKLQEFEERSKLDGDKDSYWTTYDYNA 261
E IAD ++E+ V L E SKLD + +Y T Y+ NA
Sbjct: 660 ETIADPSVEIDVANLPSSLELSKLDVETSTYHTAYEANA 698
>01_01_0137 + 1249081-1249341,1249500-1250237
Length = 332
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = -2
Query: 485 PTNSMYCSP*STLVKSANLPGGMALATIGASMHIPASMKNEGKGEKFSWLS*RNFKSVGF 306
PTNS ++ V+S++L GG A G + +P + +E GE LS R ++
Sbjct: 258 PTNSDNMVMMTSKVRSSDLSGGFPAAEQGMFLVVPPELLHEVSGET-PILSIRIDRAAPA 316
Query: 305 STEAPTPRA 279
+ TPRA
Sbjct: 317 IAKPTTPRA 325
>06_03_0943 -
26191798-26192244,26192802-26192966,26193515-26193668,
26194153-26194346,26194494-26194695,26194899-26195103,
26195672-26195843
Length = 512
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 367 FFILAGMCMEAPIVANAMPPG-KFADFTNVLHGEQYIEFVGDFPGTEGVFTTRCYVVDIL 543
++++ G P +A G ++ DFT V HG+ + V GT + Y +
Sbjct: 417 YYVVPGYNKTGPALAQGAATGNRYPDFTRVNHGKYAVSDVRANIGTSNLIWDYFYTTAGV 476
Query: 544 DKGSSAVAIVN 576
G+ + AIV+
Sbjct: 477 SFGTYSPAIVS 487
>10_01_0238 +
2496974-2497618,2497738-2497980,2498202-2499211,
2499329-2499370,2499465-2499492
Length = 655
Score = 28.3 bits (60), Expect = 5.4
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 3/129 (2%)
Frame = +1
Query: 91 ESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDSYWTTYDYNAKDL 270
+ +KE+ K +M + TLEL K Q F D Y D N +
Sbjct: 263 DCIKEDIDKRPEMNDVAARLRELRKTLELGGKRQNFSTALSKSSSSDVYLGDIDDNTRVA 322
Query: 271 VIYALGVGASVENPTDLKFLYESHENFSPLPSFFILAGMCMEA--PI-VANAMPPGKFAD 441
V V S E L+ + +S + F G C+E PI V +P G +
Sbjct: 323 VKVFTNVSESREEFV-LQLIIQSQVQHQNIVKLF---GCCLEMDHPISVCEYVPNGALCN 378
Query: 442 FTNVLHGEQ 468
+ V GE+
Sbjct: 379 YLVVEKGEE 387
>09_04_0517 -
18253325-18253870,18254209-18254781,18254888-18255100,
18255554-18255685,18255804-18255944,18256104-18256325
Length = 608
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +1
Query: 100 KENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDSYWTTYDYNAKDLV-- 273
KENW++ + RG +++ +I + LV +E R++ D Y + A+D++
Sbjct: 272 KENWNRGIKERGKENINEIEEKATSLV--TCTYEHRTQWGND---IGVKYGFPAEDIITG 326
Query: 274 --IYALGVGASVENPTDLKFL 330
I+ G ++ NP FL
Sbjct: 327 LAIHCRGWESAFINPKRAAFL 347
>08_02_0212 + 14342316-14342686,14343471-14343521,14345812-14346940
Length = 516
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 112 SKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDSYWTTYDYNAKDLVIYALGV 291
S V+ +G + + + L L E E++S L G+ + +W + ++ + LG+
Sbjct: 317 SHVLSNKGTPLRPGVPPMDVYLFSLLDE-EQKSTLPGNFERHWGVFSFDGQAKYPLNLGL 375
Query: 292 GASV-ENPTDLKFL 330
G+ V +N D+ +L
Sbjct: 376 GSPVLKNAKDVPYL 389
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -1
Query: 624 VLLGSAYQLLILEYFTVHNGHGAGALVQDIDNVT--TGCEDSLGAREVTDEFNVLLSVKH 451
+L G + +L Y G G Q ID+V TG SLG +TD + +++
Sbjct: 289 ILAGHTADVSMLAY---EYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPM 345
Query: 450 ISEISEFARRHGVSNDRG 397
+ + EF + H V DRG
Sbjct: 346 LYAMEEFPQLHEVV-DRG 362
>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
Length = 575
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 178 VDKLQEFEERSKLDGDKDSYWTTYDYNAKDLVIYALGVGASVENPTDLKFLYES-----H 342
+ +LQ ++ L + ++ TY Y + YA+ + V +P D++ L+ S H
Sbjct: 426 IPELQLYDYSEPLFRNLIAFEQTYPYTRGHVTAYAVFMDCLVTSPEDMRLLHLSGVLVNH 485
Query: 343 ENFSPLPSFFILAGMCMEAPIVAN 414
N P+ F + +C EA + A+
Sbjct: 486 MNRDRDPTGF-FSRLCSEAHLAAD 508
>05_04_0066 +
17621532-17621619,17621658-17621820,17621864-17622233,
17622548-17623009
Length = 360
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +1
Query: 145 LEKIADVTLELVDKLQEFEERSKLDGDKDSYWTTYDYNAKDLVIYALGVGASVENPTDLK 324
+ ++D+ + L ++ E E++SKL D + + N +V Y V + P+++K
Sbjct: 194 INDVSDILVPLYNE-DELEKKSKLFSDHSLRYL-FLLNNSYVVQYQFLVPSDYSPPSEIK 251
Query: 325 FLYESHE 345
F YE ++
Sbjct: 252 FHYEQYQ 258
>02_01_0091 + 646299-649082
Length = 927
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 64 KRPSDPVTIESVKENWSKVVDMRGAKHLEKIAD 162
K+PS V+I +++ + KV+D R + LE+I +
Sbjct: 628 KKPSHSVSIRAIEHHRYKVIDRRSNRVLEEIEE 660
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 509 SSQPVVTLSISWTRAPAPWPL 571
SSQP T S S ++ P PWPL
Sbjct: 77 SSQPPSTSSSSLSQLPPPWPL 97
>09_02_0470 +
9629062-9629355,9629948-9630893,9630948-9631102,
9631299-9631358,9633374-9633444,9633626-9633663,
9633824-9633876,9633970-9635235,9635632-9635672,
9636821-9636887
Length = 996
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 94 SVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDSYW 240
SV+ + K+ M + + KI ++ ++ D L EFE+ S+ + S W
Sbjct: 48 SVEGKYFKM-SMEAQEWMRKINQISYDIQDLLDEFEDCSEAGSQRGSSW 95
>03_05_0207 -
21985340-21985570,21986430-21986636,21999578-21999667,
21999764-21999945,22000130-22001042,22003184-22003266,
22004622-22004939,22005044-22005107
Length = 695
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 250 DYNAKDLVIYALGVGASVENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANA--MP 423
DY++KDL+ +A GVGA+ + +K + + + + LAG +P +A P
Sbjct: 215 DYSSKDLLQHASGVGAASKRKAKVKATHLALARYLKVD----LAGSLESSPQLATVEHQP 270
Query: 424 PG 429
PG
Sbjct: 271 PG 272
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 23.4 bits (48), Expect(2) = 7.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 78 PGHDRIGQRELVQSRGHERRQTFGEDRRCHARTCRQ 185
P H+ I +S+ HE +TFG D A+ CRQ
Sbjct: 824 PDHENIEALGSSRSKIHEMYKTFG-DLGDVAQECRQ 858
Score = 22.6 bits (46), Expect(2) = 7.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 174 TCRQTSGI*RTFQTGRRQGLLLDDVRLQRK 263
T R+ SGI + TGRR+ L+L +R R+
Sbjct: 877 TLRKLSGIAGSGSTGRRKILVLHLIRSCRE 906
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 1 DSTLGFATKAQLFRSNGAPLKKRPSDPVTIESVKENWSKVVDMRG 135
D L ATK L + G PL + ++ E+WSKV D G
Sbjct: 347 DHELVAATKRILKKCGGVPLSIITIASLLVDKPVEDWSKVYDSIG 391
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 296 LRSRTRPI*SSFTRATRISLPYPRSSYWLE 385
LR R RP FT +R+ LP P+SS W+E
Sbjct: 30 LRLRLRPKPLLFT--SRLLLPVPKSSSWVE 57
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -2
Query: 485 PTNSMYCSP*STLVKSANLPGGMALATIGASMHIPASMKNEGKGEKFSWLS*RNFKSVGF 306
P+N + +++V+S++L GG A G + +P M + G + + LS R ++
Sbjct: 576 PSNDDNMAMMTSMVRSSDLAGGFPAADKGMLLWVPPEMLHGVPGGEAAILSIRIDRAAAA 635
Query: 305 STEAPTPRA 279
+ + T RA
Sbjct: 636 TPKFTTTRA 644
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,876
Number of Sequences: 37544
Number of extensions: 435252
Number of successful extensions: 1305
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -