Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4n06
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28943-4|AAA68358.1| 298|Caenorhabditis elegans Hypothetical pr... 81 7e-16
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 2.1
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 2.1
Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical p... 29 2.8
DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein. 29 2.8
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 29 2.8
Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical pr... 29 3.7
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 28 4.9
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 28 4.9
AC024761-8|AAF59469.2| 335|Caenorhabditis elegans Hypothetical ... 28 4.9
U39674-1|AAA80413.2| 137|Caenorhabditis elegans Hypothetical pr... 28 6.4
U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical pr... 27 8.5
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 27 8.5
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 27 8.5
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 27 8.5
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 27 8.5
AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical... 27 8.5
>U28943-4|AAA68358.1| 298|Caenorhabditis elegans Hypothetical
protein E04F6.3 protein.
Length = 298
Score = 81.0 bits (191), Expect = 7e-16
Identities = 47/110 (42%), Positives = 64/110 (58%)
Frame = +1
Query: 247 YDYNAKDLVIYALGVGASVENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPP 426
+ Y+ +D +IYALGVGA + DL ++YE+HE+F LPS+ + G +A + + P
Sbjct: 16 FSYSTRDAIIYALGVGARAKE--DLCYVYENHEDFKVLPSYIVAPG--FQAHTLMDW--P 69
Query: 427 GKFADFTNVLHGEQYIEFVGDFPGTEGVFTTRCYVVDILDKGSSAVAIVN 576
G D VLHGEQYIE EG + VVDILDKGS A+ + N
Sbjct: 70 GVEFDLQRVLHGEQYIEVYQPL-SAEGKLKSEARVVDILDKGSGALILGN 118
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.5 bits (63), Expect = 2.1
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Frame = +1
Query: 52 APLKKRPSDPVTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQ---EFEERSKLDG 222
APL + + + E+ ++ + + +E +A L+ V K+ E K DG
Sbjct: 6049 APLDRTLIESEQYRASIESLNRRSPVEPKRSVEDLASEALQNVTKISFGHADESDDKHDG 6108
Query: 223 DKDSYWTTYDYNAKDLVIYALGVGASVENPTD---LKFLYESHENFSPLPSFFILAGMCM 393
D D W YD + + L ++ + V + + + +SP S F+ C
Sbjct: 6109 DNDGEWKVYDRHGEVLEEFSTQLTDDVIQEAEGDATTHIMMTQAEYSPRRSKFLKQESCQ 6168
Query: 394 EAPIVANAMPPGKFADF---TNVLHGEQ 468
E ++N ++D N+L GE+
Sbjct: 6169 E---ISNEPEVDYYSDLQEKLNILAGEK 6193
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.5 bits (63), Expect = 2.1
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Frame = +1
Query: 52 APLKKRPSDPVTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQ---EFEERSKLDG 222
APL + + + E+ ++ + + +E +A L+ V K+ E K DG
Sbjct: 6049 APLDRTLIESEQYRASIESLNRRSPVEPKRSVEDLASEALQNVTKISFGHADESDDKHDG 6108
Query: 223 DKDSYWTTYDYNAKDLVIYALGVGASVENPTD---LKFLYESHENFSPLPSFFILAGMCM 393
D D W YD + + L ++ + V + + + +SP S F+ C
Sbjct: 6109 DNDGEWKVYDRHGEVLEEFSTQLTDDVIQEAEGDATTHIMMTQAEYSPRRSKFLKQESCQ 6168
Query: 394 EAPIVANAMPPGKFADF---TNVLHGEQ 468
E ++N ++D N+L GE+
Sbjct: 6169 E---ISNEPEVDYYSDLQEKLNILAGEK 6193
>Z36282-4|CAI06055.2| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 55 PLKKRPSDPVTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDS 234
PLK+ S V E +KEN K+ R ++ L + + + K ++ + LDGD +
Sbjct: 384 PLKRHRSCHVISEIIKENERKI---RISRRLIRRSSIASACPRKERKNIDERALDGDDED 440
Query: 235 YWTTYDY 255
W +++
Sbjct: 441 DWDVHEF 447
>Z31590-10|CAA83466.3| 801|Caenorhabditis elegans Hypothetical
protein R01H10.8 protein.
Length = 801
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 55 PLKKRPSDPVTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDS 234
PLK+ S V E +KEN K+ R ++ L + + + K ++ + LDGD +
Sbjct: 384 PLKRHRSCHVISEIIKENERKI---RISRRLIRRSSIASACPRKERKNIDERALDGDDED 440
Query: 235 YWTTYDY 255
W +++
Sbjct: 441 DWDVHEF 447
>DQ104391-1|AAZ08414.1| 801|Caenorhabditis elegans CNK-1 protein.
Length = 801
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 55 PLKKRPSDPVTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDS 234
PLK+ S V E +KEN K+ R ++ L + + + K ++ + LDGD +
Sbjct: 384 PLKRHRSCHVISEIIKENERKI---RISRRLIRRSSIASACPRKERKNIDERALDGDDED 440
Query: 235 YWTTYDY 255
W +++
Sbjct: 441 DWDVHEF 447
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 504 LGAREVTDEFNVLLSVKHISEISEFARRHGVSNDRGLHAHSSQYEERG*GREILVALVKE 325
L A +FN+ + + + E E HG+ ++ + +S EE+ ++LVA KE
Sbjct: 623 LRAARYRPDFNIFNN-EDVHENEEGVEYHGIGGEKTVGIRTSGLEEKATACDMLVAFAKE 681
Query: 324 LQ 319
++
Sbjct: 682 MK 683
>Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical
protein C11G6.1 protein.
Length = 643
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +1
Query: 4 STLGFATKAQLFRSNGAPLKKRPSDPVTIESVKENWSKVVDMRGAKHL-EKIADVTLELV 180
S++ T ++ G P K +P VT+ K K + K L E+I + +
Sbjct: 380 SSMSIGTPTKVKGLPGRPKKPKPEGVVTVPKPKGRPPKKATLEKRKRLSEQIIAQQQKKL 439
Query: 181 DKLQEFEERSKLDGDKDSYWTTYDYNAKDLVIYA 282
D+ +E +E+ + DK T +D ++ A
Sbjct: 440 DEFKEEKEKQEKTSDKKPKKQTLAEEIRDQLLRA 473
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 399 GLHAHSSQYEERG*GREILVALVKELQIGRVLDRSSHSQ 283
GLH S +E ++ LV +LQI VLD S S+
Sbjct: 1721 GLHLMSHTAARNSMAKEYVIPLVPQLQIKNVLDPDSESR 1759
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 399 GLHAHSSQYEERG*GREILVALVKELQIGRVLDRSSHSQ 283
GLH S +E ++ LV +LQI VLD S S+
Sbjct: 1842 GLHLMSHTAARNSMAKEYVIPLVPQLQIKNVLDPDSESR 1880
>AC024761-8|AAF59469.2| 335|Caenorhabditis elegans Hypothetical
protein Y38C1AA.3 protein.
Length = 335
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 276 LRPGSGSFGREPDRFEVPLREPREFLSLTLVLHT-GWNVH 392
L+ G G G+EP PL E + S LV++T W+ H
Sbjct: 109 LKIGDGDAGQEPSSAITPLNELLQLSSWDLVVYTKDWHPH 148
>U39674-1|AAA80413.2| 137|Caenorhabditis elegans Hypothetical
protein C06E2.5 protein.
Length = 137
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 5 PHWVSQPKHNYLGAME-PHSRRDLQTRSRSNRSKRIGPKSWT*EAPNIWRRSQMSR*NLS 181
P + Q N +GA E P ++R N+ T + PNI +RS MSR S
Sbjct: 74 PSEIVQQPSNAVGATEEPAAKRARTDTPEPNKENTTEVPRRTFKIPNILKRSHMSRNRQS 133
Query: 182 T 184
T
Sbjct: 134 T 134
>U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical
protein C01F4.2b protein.
Length = 622
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 310 PTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGE 465
P D K+LY S +N P + + +PI+ +A P G N+L E
Sbjct: 439 PEDRKWLYPSTQNLYPTST----SNPSSPSPIMGSAPPTGSILPSANLLSAE 486
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 310 PTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGE 465
P D K+LY S +N P + + +PI+ +A P G N+L E
Sbjct: 439 PEDRKWLYPSTQNLYPTST----SNPSSPSPIMGSAPPTGSILPSANLLSAE 486
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +1
Query: 172 ELVDKLQEFE-ERSKLDGDKDSYWTTYDYN-------AKDLVIYALGV---GASVENPTD 318
E V KL+ E E SK+ +S W + + DL + ALGV G V+ P +
Sbjct: 826 ETVQKLRRRESEMSKVSNVSESDWDSETGKEPEVAEISLDLSVVALGVDESGKVVDIPKE 885
Query: 319 LKFLYESHENFSP 357
+ + HE+FSP
Sbjct: 886 VPKAVQRHESFSP 898
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +1
Query: 172 ELVDKLQEFE-ERSKLDGDKDSYWTTYDYN-------AKDLVIYALGV---GASVENPTD 318
E V KL+ E E SK+ +S W + + DL + ALGV G V+ P +
Sbjct: 826 ETVQKLRRRESEMSKVSNVSESDWDSETGKEPEVAEISLDLSVVALGVDESGKVVDIPKE 885
Query: 319 LKFLYESHENFSP 357
+ + HE+FSP
Sbjct: 886 VPKAVQRHESFSP 898
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +1
Query: 172 ELVDKLQEFE-ERSKLDGDKDSYWTTYDYN-------AKDLVIYALGV---GASVENPTD 318
E V KL+ E E SK+ +S W + + DL + ALGV G V+ P +
Sbjct: 826 ETVQKLRRRESEMSKVSNVSESDWDSETGKEPEVAEISLDLSVVALGVDESGKVVDIPKE 885
Query: 319 LKFLYESHENFSP 357
+ + HE+FSP
Sbjct: 886 VPKAVQRHESFSP 898
>AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical
protein Y39B6A.38 protein.
Length = 410
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 151 KIADVTLELVDKLQEFEERSK 213
++A V ++L ++QEFEERSK
Sbjct: 382 RLAQVRIQLEIRIQEFEERSK 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,731,168
Number of Sequences: 27780
Number of extensions: 341941
Number of successful extensions: 1106
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -