Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4n06
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               31   0.007
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.12 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.27 

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 21/73 (28%), Positives = 40/73 (54%)
 Frame = +1

Query: 82  VTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDSYWTTYDYNA 261
           V +E+ K+N SKV+D   ++ ++ + +V L +VD+L +   +  L    D++    D   
Sbjct: 349 VALEAEKKNLSKVIDQH-SQLIDTLENV-LAIVDRLMDETNQLTLQETADAFKDLQDKYY 406

Query: 262 KDLVIYALGVGAS 300
           ++  +Y LG  AS
Sbjct: 407 EEYKMYELGELAS 419



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 542 WTRAPAPWPL*TVKYSKISNWY 607
           W +  A W   +  Y +++NWY
Sbjct: 654 WLQVLALWLNHSPNYDQVTNWY 675


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 550 GSSAVAIVNSEIFQNKQLVCRTQQHIFVL 636
           G   VAIV++   +++Q +CR + H F L
Sbjct: 718 GPRGVAIVSASTARSEQFLCRYEAHCFAL 746


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 630  ENVLLGSAYQLLILEYFTVHNGHGAG 553
            EN+L GS YQ+    Y T +NG G G
Sbjct: 1425 ENLLCGSRYQI----YVTAYNGIGTG 1446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,939
Number of Sequences: 438
Number of extensions: 3938
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)