Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4n03
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    38   0.002
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    26   4.8  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   4.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.4  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   6.4  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   6.4  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   8.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.5  

>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 310 HKKNEHWCIAYTNTPDVLSFMAVFLKVGDNAPLGAFET*SG 432
           H K+  W +A+TNT DV   M + L+ GD      F + SG
Sbjct: 311 HNKSVSWVVAFTNTKDVTGIMKILLRKGDTVIATNFSSVSG 351


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -3

Query: 153 GNYEIIYLLTHFY--ILVLVTSMF 88
           G YE ++L  HFY  I+ L+ SMF
Sbjct: 260 GRYECLWLSCHFYYSIIYLLNSMF 283


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 292 FHKYVFHKKNEHWCIAYTNTPDVLSFMAVFLKVGD 396
           + +++FH +   +   + N+PD  SF    L V D
Sbjct: 576 YPQFIFHLRRSPFLHIFNNSPDETSFYRHMLNVAD 610


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 215 TQIIILRICFLLQDVIPSLWKVTREHFIST 304
           T ++   +  LL  + PSL+K   EH+ ST
Sbjct: 536 TSLVSQNVVTLLPIIYPSLYKTANEHWNST 565


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 123 HFYILVLVTSMF*NLLSKSQFSYFYFTSRSDR 28
           H  ++ L +    NLLS++QF   YFT  SD+
Sbjct: 506 HQTLVFLYSLEIQNLLSQNQFPTVYFTKISDQ 537


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 91  HRRN*Y*YIKVC**VYYFVIACTLLPRTLNHIK 189
           H R    Y+KVC  VY F   C +L   LN  K
Sbjct: 239 HHRRCVVYMKVCVAVYVFDRGCRMLRSFLNRSK 271


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 685 N*MLSMHTLQCMYTMYSKHIMNFVF*VRYEAFL 587
           N + +MHTL      +S H MN  F +R+E +L
Sbjct: 349 NHVQTMHTLTYAIQYWSNHTMNAYF-LRHEGYL 380


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 444 RPLMATLGFKRPQGGVISHFEK 379
           R L+   G +RPQG   S FEK
Sbjct: 428 RALLMGTGLRRPQGSKYSFFEK 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,341
Number of Sequences: 5004
Number of extensions: 72105
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)