Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4n03
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555     34   0.10 
02_05_1116 - 34229234-34229440,34229534-34229593,34229663-342300...    29   3.8  
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    28   6.7  

>09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555
          Length = 530

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 533 LKNTISAATDGAPAMTEYQKGFISYLKNKIHDVLAVH 643
           L+  I+ AT G PA+TE + G + Y+K  + +VL +H
Sbjct: 354 LQEEIARATGGKPAITEAEVGGMEYMKAVVKEVLRLH 390


>02_05_1116 -
           34229234-34229440,34229534-34229593,34229663-34230073,
           34230357-34230687,34230781-34230867,34230952-34231331,
           34231531-34232105,34233035-34233272
          Length = 762

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 169 LVAECRQLRNNIP--TNTLLYISISYVDVLEFIIEITVFLFL 50
           +VA+C +++N I     + L+    YV V   I  + +FLFL
Sbjct: 66  VVAKCAEIQNAIAEGATSFLFTEYQYVGVFMSIFAVVIFLFL 107


>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 230 LRICFLLQDVIPSLWKVTREHFISTY 307
           LR CFL   V P  +K++++H I+ +
Sbjct: 430 LRTCFLYLSVFPEDYKISKQHLINRW 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,256,374
Number of Sequences: 37544
Number of extensions: 410005
Number of successful extensions: 910
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)