Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4n03
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    29   4.5  
U64835-7|AAG24198.2|  427|Caenorhabditis elegans Hypothetical pr...    28   7.9  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    28   7.9  

>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 265 FLVESHS*TFHKYVFHKKNEHWCIAYTNTPDVLSFMAVFLKVGDN 399
           FLV+S     H    H    +    Y+++PD +  +  F  +G+N
Sbjct: 40  FLVDSTPNHLHDVAIHTCENYTVFTYSDSPDTVFTLKYFKNIGEN 84


>U64835-7|AAG24198.2|  427|Caenorhabditis elegans Hypothetical
           protein T09D3.4 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 458 KNWGR*CGLG--GRHIICNFCDKKGIPLKNTISAATDGAPAMTEYQKGFISYLK 613
           K +G  C  G  GR  IC FCD        TI+A TDG   +    + F  ++K
Sbjct: 182 KTFGNCCFTGKFGRSTICRFCD--------TINAFTDGKAHLQRKSEKFSKWVK 227


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 546 IVFFNGIPFLSQKLQIICRPPNPHQRPQFFW 454
           I+F+ GIP + Q+L +     NP Q   F W
Sbjct: 513 ILFYRGIPNIRQQLNVKGEYSNPDQEMLFDW 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,427
Number of Sequences: 27780
Number of extensions: 406662
Number of successful extensions: 1054
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)