Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4n02
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 100 2e-21
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 31 1.3
03_01_0515 - 3864796-3865425 29 2.9
11_06_0445 - 23679918-23680282,23680415-23683349 29 3.9
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125... 29 5.2
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 29 5.2
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 29 5.2
12_01_0680 + 5797152-5797481,5797816-5798331,5798868-5798944,580... 28 9.0
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 28 9.0
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 99.5 bits (237), Expect = 2e-21
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +2
Query: 227 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDE 403
MPGLMACR ++ P++ KGARI+GSLH T+Q AVLIETL LG ++
Sbjct: 1 MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPR 60
Query: 404 AAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVH 565
++AWKGET +EY WC E+ L + G ++I+DDGGD T L+H
Sbjct: 61 RRPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAGPDLIVDDGGDATLLIH 114
Score = 78.2 bits (184), Expect = 6e-15
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = +2
Query: 566 TKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSVTKSKFDNLYGCR 733
+KY + + + G++EETTTGV LY+M G L PAINVNDSVTKSKFDNLYGCR
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDSVTKSKFDNLYGCR 211
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +2
Query: 200 KEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTV------QTAVLIETLIELGAE 361
KE+M E PG++ R + +++ IA LH V QTA L+ + L +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255
Query: 362 VQWSSSNIYSTQDE 403
V+ S + ST+DE
Sbjct: 256 VEELSKKLCSTEDE 269
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -1
Query: 481 TPNILVISFSLPGIDGYSYGNQC-SCGLVLCTINVTAGPLYLCSQFY*SLNKNRCLYCHV 305
+P V +++ + ++ + C + G L +NV +G CS N L +V
Sbjct: 123 SPVTNVNDYTIQQVGKFAVQSYCLNTGAKLVYVNVVSGQTQPCS----GGGSNYQLVINV 178
Query: 304 *AAGYSGTFEYFSWSIFPTTCHKAWHF 224
A + + F W I TT K W F
Sbjct: 179 AAGVRTAQYSVFVWGILGTTTWKLWSF 205
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 512 KPLNMILDDGGDLTNLVHTKYPDLLKDV 595
+P + I DG DL N V + +PD + D+
Sbjct: 1007 QPTDEIFQDGMDLHNFVESAFPDQISDI 1034
>09_06_0342 +
22410674-22411060,22412219-22412299,22412376-22412579,
22412765-22412959,22413064-22413228,22413501-22413761,
22413908-22414126,22414285-22414504,22414591-22414613,
22414728-22414766
Length = 597
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +2
Query: 152 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 331
+PP + ++ GR+ EKE L +R+ A+IL G R G+ ++ V+ A +
Sbjct: 33 RPP--LQQQQQVGLGRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVR-ADI 89
Query: 332 IETLIELGAEVQW 370
E + L E W
Sbjct: 90 NEVIAALAREAGW 102
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 533 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 646
DD + +L H Y D +KD K E +HN KM
Sbjct: 448 DDDNFIISLDHKHYADHIKDHKADAEYLNKPIHNYSKM 485
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = -2
Query: 675 AGTFKSPSRNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKI 526
AG+ + P ++ + P+ +++ PF SF+ ++V + V SPP++ +
Sbjct: 98 AGSARLPYPDVKWAAVPPLAIAAGAPFASFRAERWIVVS--VSSPPTAAL 145
>12_01_0680 +
5797152-5797481,5797816-5798331,5798868-5798944,
5800706-5800778,5801689-5801786,5801868-5801964,
5802451-5802516,5802717-5802764,5803223-5803297,
5803913-5803970,5804553-5804611,5805098-5805160,
5805161-5805205,5805490-5805588,5805713-5805760,
5805884-5805931,5806008-5806064
Length = 618
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 533 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 646
DD + +L H Y D +KD K E +HN KM
Sbjct: 92 DDENFIISLDHKHYADHIKDHKADAEYLNKPIHNYGKM 129
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +2
Query: 275 LKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKG 454
L GARI S + + + + T L A+V+ SS + Q + +P+ A +
Sbjct: 859 LNGARIMKSTRIQI-SCIPFGTSSLLDAKVESSSKRDWVVQGLDVHICMPYRLPLRAIED 917
Query: 455 ETDD-----EYIWCIEQTLIFPDGK 514
+D + I ++T++FPDGK
Sbjct: 918 AVEDMIRALKLISAAKKTMLFPDGK 942
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,266,649
Number of Sequences: 37544
Number of extensions: 400234
Number of successful extensions: 934
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -