Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m24
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   209   3e-55
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    29   0.66 
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   2.0  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    27   3.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.7  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   6.1  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   8.1  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  209 bits (511), Expect = 3e-55
 Identities = 106/212 (50%), Positives = 153/212 (72%), Gaps = 2/212 (0%)
 Frame = +3

Query: 81  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 260
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 261 VMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DT 434
           VM+ AAFS+AE  F  G+  N  + Q+V + ++++RSK++N++GV LP FE   D S D 
Sbjct: 61  VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120

Query: 435 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 614
           ++L GL +GGQQ+ K ++ ++ AV+ LV+LAS Q++FV L +V+++TNRRVN+IEH+IIP
Sbjct: 121 FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIP 180

Query: 615 RLERTLAYIISELDELEREEFYRLKKIQDKKK 710
           RLE T+ YI SEL+ELERE+F RLKK+Q  K+
Sbjct: 181 RLENTIKYIESELEELEREDFTRLKKVQKTKE 212


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 24/89 (26%), Positives = 41/89 (46%)
 Frame = +3

Query: 435  YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 614
            + L  L    Q   +LKK     ++L  EL   Q S   ++  +  TN  + A+E+++  
Sbjct: 811  FNLRPLLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLL-- 868

Query: 615  RLERTLAYIISELDELEREEFYRLKKIQD 701
              ER +A    + +E+ R    RL  I+D
Sbjct: 869  TTERAIAL---DKEEILRRTQERLANIED 894


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 518 DQKLYSALEVLLQLCKLLPTTGQTSQLVGIRTILV*LKDWEG 393
           DQ   + LE L++LC L  TT ++   +    I + LKD++G
Sbjct: 378 DQPNLTLLEYLIRLCALESTTQESVLQLPDEQIALYLKDYQG 419


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 452 GPWWA-AACKAEEELPERCKAFGRVSFTADFI 544
           G WW   +C  EEE+    KAFG    T + I
Sbjct: 304 GTWWLDVSCPKEEEIRVLAKAFGIHPLTVEDI 335


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 281  ESSFFHHFTHKGFSLNDFAQDHTEPHL 201
            + SF+ HF H GF +  +     + HL
Sbjct: 1516 KKSFYKHFLHSGFPVESYLHKVLDNHL 1542


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 522 LASLQTSFVTLDEVIKITNRRVNAIEHVII 611
           + SL       D+V+KI  +R   ++H++I
Sbjct: 81  MTSLNLFVTKFDQVLKILEKRAPTVDHILI 110


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +3

Query: 477  KLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVI------IPRLERTLAY 638
            K KKN Q +    VEL++L + + T  E I      + ++   +      +   E  L  
Sbjct: 961  KKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRLREFENALWD 1020

Query: 639  IISELDELEREEFYRLKKIQDKK 707
            I S +DEL +   +  K++   K
Sbjct: 1021 INSSIDELVKFIEFESKQMNSVK 1043


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,864
Number of Sequences: 5004
Number of extensions: 56534
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)