Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m24
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1340 + 32766773-32767582                                        222   3e-58
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381...    34   0.13 
07_03_0525 - 19044978-19045508                                         29   2.8  
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981...    29   3.7  
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249...    29   4.8  
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    28   6.4  
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923...    28   6.4  
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672     28   8.5  

>04_04_1340 + 32766773-32767582
          Length = 269

 Score =  222 bits (542), Expect = 3e-58
 Identities = 120/220 (54%), Positives = 155/220 (70%), Gaps = 10/220 (4%)
 Frame = +3

Query: 81  MSGK-DRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 257
           MSG+  RL + P+     ++K RL GA +GH LLKKK+DAL V+FR IL KI+  K  MG
Sbjct: 1   MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60

Query: 258 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQD---- 422
           E M+ ++FSLAEAK+  GD    VVLQ+V  A +++RS ++NVAGV LP F  + D    
Sbjct: 61  EAMRASSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAG 120

Query: 423 ----GSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVN 590
                + +  L GLARGGQQ+A  +     A+++LVELASLQTSF+TLDE IK TNRRVN
Sbjct: 121 SAGPSNASPSLTGLARGGQQVAACRAAHVKAIEVLVELASLQTSFLTLDEAIKTTNRRVN 180

Query: 591 AIEHVIIPRLERTLAYIISELDELEREEFYRLKKIQDKKK 710
           A+E+V+ PRLE T++YI  ELDELERE+F+RLKKIQ  KK
Sbjct: 181 ALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKK 220


>07_03_1198 +
           24734985-24735169,24737897-24737975,24738070-24738134,
           24738214-24738313,24738429-24738470,24739062-24739100,
           24739140-24739330,24739745-24739850
          Length = 268

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
 Frame = +3

Query: 168 HGLLKKKADALQVRFRMILSKIIETKTL--MGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 341
           +G+LK K DALQ   R +L + ++T T+  + ++  +  +SL   K      NQ++ +++
Sbjct: 95  YGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSL---KHIRSKKNQLLFESI 151

Query: 342 TKAQIKIRSKKD 377
           ++ Q K +S K+
Sbjct: 152 SELQKKEKSLKN 163


>07_03_0525 - 19044978-19045508
          Length = 176

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +3

Query: 147 LAGAVKGHGLLKKKADALQVRFRM--ILSKIIETKTLMG-EVMKEAAFSLA 290
           LAGA  G G +KK+A  ++VR R+  I+S I  T  L   +V+K + F +A
Sbjct: 110 LAGAGAGDGPVKKRAVRVRVRDRVGKIMSSISRTIHLTSRDVVKHSGFRVA 160


>07_02_0020 -
           11897013-11897168,11897521-11897637,11898141-11898197,
           11898278-11898370,11898452-11898571,11898774-11898890,
           11899254-11899349,11899445-11899594,11899932-11900086,
           11901047-11901257
          Length = 423

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
 Frame = +3

Query: 114 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAE 293
           SRG    ++  L G      L  +  D L V F   +S  I    L    +K   +   E
Sbjct: 69  SRGLSDELEQLLKGIAMMKELTLRTRDYL-VSFGECMSTRIFAALLNKLGVKARQYDAFE 127

Query: 294 AKF-TTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESY-QDGSDTYELAGLARGGQ 467
             F TT DF    +   T   I  R   D V G  +PI   +   G  T  +  L RGG 
Sbjct: 128 IGFITTDDFTNADILEATYPAIAKRLHGDWVTGPAIPIVTGFLGKGWKTGAITTLGRGGS 187

Query: 468 QL 473
            L
Sbjct: 188 DL 189


>02_05_0430 -
           28923784-28923830,28923931-28924341,28924552-28924963,
           28925000-28925542,28925790-28925884,28926003-28927033,
           28927304-28927452,28927483-28927523,28927594-28928206
          Length = 1113

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 288 AEAKF-TTGDFNQVVLQNVTKAQIKIRSKKD 377
           AE+KF   G  N  ++QN+T+ ++ ++ KKD
Sbjct: 25  AESKFGEEGVTNDAIMQNLTQTELLVKEKKD 55


>12_01_0151 -
           1158834-1159703,1159917-1160092,1160144-1162097,
           1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 81  MSGKDRLAIFPSRGAQML--IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLM 254
           M  K +LA+F  + A  +  IK R A  V+  G +    +A+ +   +  +KII   +L+
Sbjct: 95  MRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLL 154

Query: 255 GEV 263
           G V
Sbjct: 155 GNV 157


>06_02_0041 +
           10889741-10890092,10890161-10890235,10891139-10892341,
           10892970-10893253,10893343-10893459,10894126-10894388,
           10894557-10894725,10894838-10895110,10895674-10895718,
           10896472-10896591,10896926-10896987,10897296-10897318,
           10897911-10898128
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +3

Query: 267 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYE 440
           K+A  S +    TTGD N  +L+       ++   +D   GVT+   E  +     +E
Sbjct: 205 KDAEASASAPPLTTGDGNSDILEETPSTSSELPDNQDYETGVTMSFDEQLKAFGSCHE 262


>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
          Length = 629

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 81  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQV 206
           +   DRLAI P   + +   G L  +V+G G+  +K  +L V
Sbjct: 153 LGADDRLAIVPFHSSVVDATGLLEMSVEGRGVASRKVQSLAV 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,342,212
Number of Sequences: 37544
Number of extensions: 380555
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)