Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m17
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...   110   2e-25
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    33   0.038
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    28   1.4  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   3.3  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   4.3  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   5.7  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    26   5.7  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   5.7  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   7.6  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   10.0 
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   10.0 
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   10.0 
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    25   10.0 

>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score =  110 bits (265), Expect = 2e-25
 Identities = 64/165 (38%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
 Frame = +3

Query: 183 LIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYV 362
           L ++  ++H+T  +R  LP    VLGLPIGQH+ +   ++     R+YTP+SSD DKGY 
Sbjct: 66  LSDKAVLNHNTAIYRFRLPRANDVLGLPIGQHLKVFVDVDGKEYSRSYTPLSSDADKGYF 125

Query: 363 DLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQY-TGNGTFLIKKLRKD 539
           DL++K Y           GK+S+  + +KI DTI VRGP G  ++ TG            
Sbjct: 126 DLLVKSY---------PNGKVSKKFSELKIGDTIGVRGPKGNWKHRTG------------ 164

Query: 540 PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFAN 674
                + +   +IAGGTGI PMLQ++R + ++  D TE+ LL+AN
Sbjct: 165 -----LARHFGMIAGGTGITPMLQIIRAVLSNFEDPTEITLLYAN 204


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
 Frame = +3

Query: 198 EISHDTRRFRLGLPSP-QHVLGL-PIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLV 371
           E++ D   F L   SP +H+  L PI +   ++ +     V R YTP+  D ++      
Sbjct: 52  ELTSDASLFSLVPQSPSEHLTTLEPIAK---VTIRDPSMQVQRPYTPLYLDANE------ 102

Query: 372 IKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDPPTK 551
           +K + +    K+ EG  +S Y+++ K  DTI++RGP           F   KL      +
Sbjct: 103 LKFFIR----KYEEG-PVSSYIHSKKEGDTIELRGP-----------FKTTKLDCTKYPR 146

Query: 552 VVVKKLNLIAGGTGIAPMLQLVRHICTDVN 641
           +V      I  GTGIAP+ QL + + + V+
Sbjct: 147 IVA-----IVAGTGIAPIYQLAQSVKSPVD 171


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 414 GGKLSQYLN-NMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDPPTKVVVKKLNLIAGGT 590
           GG +S +++ N+K+ D + V  P+        G F+ K+  ++     V + L   AGG 
Sbjct: 256 GGVVSNFVHDNLKVGDIVGVSPPA--------GNFVYKRSEEN-----VNRPLLCFAGGI 302

Query: 591 GIAPMLQLVRHICTD 635
           GI P++ ++     D
Sbjct: 303 GITPLIPIIETALLD 317


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 423 LSQYLNNMKINDTIDVRG 476
           LS+Y+NN+K+ND  +  G
Sbjct: 68  LSRYVNNIKLNDRFEAEG 85


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 466 MSVDRQGDCSTQETEHSSLRN*EKIRLQKLS 558
           +S++RQ DC+  E EH+S R  EK  LQK++
Sbjct: 249 LSLERQYDCANLEFEHNS-RKLEK--LQKMN 276


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 528 LRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLL 665
           +R D P  +V + L       G+ P   ++ HIC D ND   L+++
Sbjct: 262 IRSDIPIVIVFRAL-------GVVPDRDILEHICYDPNDFQMLEMM 300


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 392 ILKVYLDNQIDIAFILIARHR 330
           I+K YL+  I++A +L+ +HR
Sbjct: 126 IIKGYLEKAIELATVLVIKHR 146


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 133 LDPLDFFPHRQLAIIVAKTTTDPTP 59
           LDP  +F +R   I+  + T DP P
Sbjct: 70  LDPSQYFENRSRTIMELRQTKDPNP 94


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 411 EGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDP 542
           +    SQ ++N +++  +   G + + Q TG+G  +I  L  DP
Sbjct: 191 QASSASQTVDNSQLSSIV---GNNNKFQKTGSGDVIISDLEMDP 231


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 371 NQIDIAFILIARHRRVCSYD*VVVNFCRQMNMLTDR*SQYMLRRR 237
           +Q D   + + + R+VC ++ ++    RQ+N      S  M++RR
Sbjct: 718 HQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHP-SPMMIKRR 761


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 659 LQFGAVVDVSAYMSDQLKHW 600
           L+FG  VDV  + S + +HW
Sbjct: 49  LRFGTFVDVGKFQSWKWRHW 68


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 536 RSAYKSCRQEIELDCRRYW 592
           R   K C + +E +C R+W
Sbjct: 275 RIVKKMCSENVEFECNRWW 293


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 428 RQLPSLGKLRMYILKVYLDN 369
           R+L S+GK+  YI KVY D+
Sbjct: 65  RKLFSIGKVLDYICKVYFDS 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,366
Number of Sequences: 5004
Number of extensions: 57401
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)