Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4m17
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 163 9e-41
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 163 9e-41
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 158 4e-39
05_05_0291 + 23882579-23882660,23883073-23883214,23883310-238834... 108 3e-24
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465... 108 5e-24
01_01_0520 - 3819479-3819535,3819867-3819935,3820127-3820240,382... 87 9e-18
06_03_0845 + 25324209-25324443,25325267-25325313,25325420-253255... 29 4.5
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 29 4.5
12_02_0339 - 17721664-17722407,17722921-17723556 28 5.9
05_04_0215 - 19117335-19117390,19118051-19118426,19118861-191189... 28 5.9
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546... 28 5.9
01_06_1451 + 37451004-37451113,37451422-37451661,37451765-374518... 28 5.9
07_01_0687 - 5197349-5198665 28 7.8
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594... 28 7.8
>08_02_0958 - 23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 163 bits (397), Expect = 9e-41
Identities = 78/178 (43%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
Frame = +3
Query: 144 ITLVDSNVKYALPLIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRA 323
+ L K L++++E+S D R FR LPS VLGLP+G+HI + A I L +RA
Sbjct: 650 VALSSPRDKVPCQLVDKKELSRDVRLFRFALPSSDQVLGLPVGKHIFVCASIEGKLCMRA 709
Query: 324 YTPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTG 503
YTP S ++ G+ DL+IKVYFKN HPKFP+GG ++QYL+++ + IDV+GP G ++YTG
Sbjct: 710 YTPTSMVDEVGHFDLLIKVYFKNEHPKFPDGGLMTQYLDSLPVGAYIDVKGPLGHVEYTG 769
Query: 504 NGTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTD-VNDRTELKLLFAN 674
G F+I ++ ++L +IAGG+GI PM Q+++ + D D TE+ L++AN
Sbjct: 770 RGEFVINGKPRN------ARRLAMIAGGSGITPMYQVIQSVLRDQPEDTTEMHLVYAN 821
>08_02_0956 + 23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 163 bits (397), Expect = 9e-41
Identities = 78/178 (43%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
Frame = +3
Query: 144 ITLVDSNVKYALPLIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRA 323
+ L K L++++E+S D R FR LPS VLGLP+G+HI + A I L +RA
Sbjct: 650 VALSSPRDKVPCQLVDKKELSRDVRLFRFALPSSDQVLGLPVGKHIFVCASIEGKLCMRA 709
Query: 324 YTPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTG 503
YTP S ++ G+ DL+IKVYFKN HPKFP+GG ++QYL+++ + IDV+GP G ++YTG
Sbjct: 710 YTPTSMVDEVGHFDLLIKVYFKNEHPKFPDGGLMTQYLDSLPVGAYIDVKGPLGHVEYTG 769
Query: 504 NGTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTD-VNDRTELKLLFAN 674
G F+I ++ ++L +IAGG+GI PM Q+++ + D D TE+ L++AN
Sbjct: 770 RGEFVINGKPRN------ARRLAMIAGGSGITPMYQVIQSVLRDQPEDTTEMHLVYAN 821
>02_05_0889 - 32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 158 bits (383), Expect = 4e-39
Identities = 71/178 (39%), Positives = 117/178 (65%), Gaps = 1/178 (0%)
Frame = +3
Query: 144 ITLVDSNVKYALPLIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRA 323
+ L + K L++++ +S++ R FR LPSP LGLP+G+H+++ A I L +RA
Sbjct: 623 VALSNPREKVKCRLMDKKSLSYNVRLFRFALPSPDQKLGLPVGKHVYVCASIGGKLCMRA 682
Query: 324 YTPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTG 503
YTP SS ++ GY++L+IK+YFK PKFP+GG +SQYL+ + + TID++GP G ++Y G
Sbjct: 683 YTPTSSVDEVGYIELLIKIYFKGEDPKFPDGGLMSQYLDYLPLGATIDIKGPIGHIEYAG 742
Query: 504 NGTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTD-VNDRTELKLLFAN 674
G F + R+ ++L ++AGGTGI P+ Q+++ + D +D TE+ +++AN
Sbjct: 743 RGAFTVNGERR------FARRLAMVAGGTGITPVYQVIQAVLWDQPDDGTEMHVVYAN 794
>05_05_0291 +
23882579-23882660,23883073-23883214,23883310-23883400,
23883555-23883632,23883764-23883844,23883934-23884023,
23884658-23884723,23884883-23884987,23885127-23885219
Length = 275
Score = 108 bits (260), Expect = 3e-24
Identities = 63/165 (38%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Frame = +3
Query: 183 LIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAK-INDDLVIRAYTPVSSDEDKGY 359
L+E+ +ISH+ +FR LP+P VLGLPIGQHI + + VI+ YTP + D D G
Sbjct: 40 LVEKRQISHNVAKFRFALPTPASVLGLPIGQHISCRGQDATGEEVIKPYTPTTLDSDLGR 99
Query: 360 VDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKD 539
+LVIK+Y P+ G++S + + MK+ D + VRGP GR +Y
Sbjct: 100 FELVIKMY--------PQ-GRMSHHFHEMKVGDYLSVRGPKGRFKY-------------- 136
Query: 540 PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFAN 674
P + V+ ++AGG+GI PM Q+ R I + +D T++ L++AN
Sbjct: 137 QPGQ--VRAFGMLAGGSGITPMFQVTRAILENPSDNTKVHLIYAN 179
>01_06_1120 -
34645676-34645768,34645880-34645966,34646443-34646508,
34647126-34647215,34647317-34647397,34647598-34647675,
34647788-34647878,34647969-34648110,34648479-34648590
Length = 279
Score = 108 bits (259), Expect = 5e-24
Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Frame = +3
Query: 183 LIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAK-INDDLVIRAYTPVSSDEDKGY 359
L+E+++ISH+ RF+ LP+P VLGLPIGQHI + + VI+ YTP + D D G+
Sbjct: 50 LVEKKQISHNVARFKFALPTPTSVLGLPIGQHISCRGQDATGEEVIKPYTPTTLDSDLGH 109
Query: 360 VDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKD 539
+LVIK+Y P+ G++S + MK+ D + V+GP GR +Y
Sbjct: 110 FELVIKMY--------PQ-GRMSHHFREMKVGDYMSVKGPKGRFRYQVG----------- 149
Query: 540 PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFAN 674
V+ ++AGG+GI PM Q+ R I + ND T++ L++AN
Sbjct: 150 -----QVRAFGMLAGGSGITPMFQVARAILENPNDITKVHLVYAN 189
>01_01_0520 -
3819479-3819535,3819867-3819935,3820127-3820240,
3820330-3820419,3820666-3820743,3820885-3820936,
3821021-3821091,3821216-3821270,3821889-3821948,
3822367-3822442,3823108-3823150,3823230-3823349
Length = 294
Score = 87.4 bits (207), Expect = 9e-18
Identities = 61/164 (37%), Positives = 89/164 (54%)
Frame = +3
Query: 183 LIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYV 362
L E+ +SH+++ FR P LGL + +I YTP+S + KGY
Sbjct: 66 LQEKATVSHNSQLFRFSF-DPSTKLGLDVAS-----------CLITRYTPISDPDSKGYF 113
Query: 363 DLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDP 542
DL+IKVY P+G K+SQY ++K D ++V+GP I+KLR P
Sbjct: 114 DLLIKVY--------PDG-KMSQYFASLKPGDVVEVKGP-------------IEKLRYSP 151
Query: 543 PTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFAN 674
K K++ +IAGGTGI PMLQ+VR I + +D T++ L++AN
Sbjct: 152 NMK---KQIGMIAGGTGITPMLQVVRAILKNPDDNTQVSLIYAN 192
>06_03_0845 +
25324209-25324443,25325267-25325313,25325420-25325549,
25326105-25326205,25326625-25326933
Length = 273
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 159 SNVKYALPLIEREEISHDTRRFRLGLPSPQHVLGLPIGQHI-HLS 290
S+ A P ++ ++ T L +P+PQH++ LP + HLS
Sbjct: 175 SSTMKARPSVDNIKLEGSTSEQTLNIPNPQHIIILPFKPYYRHLS 219
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 11 LSKHE*NGKCGTTNNIWCWISGSLSNYNSQL 103
LS + N + G T+ I WIS S+YNSQL
Sbjct: 668 LSTGDWNAEAGNTSAISDWISPVPSSYNSQL 698
>12_02_0339 - 17721664-17722407,17722921-17723556
Length = 459
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 527 IKKRSAYKSCRQEIELDCRRYWHSSNASAGPTY 625
++ RSA +E+ CRR WH A+ TY
Sbjct: 390 LEPRSALDGVHREVNAYCRRRWHRWRANLVHTY 422
>05_04_0215 -
19117335-19117390,19118051-19118426,19118861-19118919,
19120455-19120712,19120853-19121059,19121201-19121351
Length = 368
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 177 LPLIEREEISHDTRRFRLGLPSPQHVLG---LPIGQHIH 284
LPL+ RE+++ D +RFR+ L + + +PIG+ +H
Sbjct: 213 LPLLNREDLTRD-QRFRIALTKSKALPSCSTIPIGETVH 250
>03_06_0206 -
32353308-32353566,32353784-32354024,32354408-32354627,
32354981-32355316,32355632-32355688,32355787-32355810
Length = 378
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 411 EGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDPPTKVVVKKLNLIAGGT 590
+ G S +L N K D + V GPSG+ I L ++ P + +IA GT
Sbjct: 192 KNGVCSNFLCNSKPGDKVKVTGPSGK----------IMLLPEEDPNATHI----MIATGT 237
Query: 591 GIAPMLQLVRHI 626
G+AP +R +
Sbjct: 238 GVAPFRGYLRRM 249
>01_06_1451 +
37451004-37451113,37451422-37451661,37451765-37451846,
37452159-37452200,37452285-37452344,37453020-37454663,
37454763-37454864,37455846-37455986,37456077-37456202,
37456376-37456543
Length = 904
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 146 NISRF*RKICITADRKGRNQS*HQEIQAGTAVSSTCIGITD 268
N+S R+ C++ ++ G ++ EI G SS+C G T+
Sbjct: 335 NVSISGRRECVSIEQHGSCRNGEMEITIGRTASSSCTGKTN 375
>07_01_0687 - 5197349-5198665
Length = 438
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 234 LPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDL 368
LP P L + + Q++ LS +++ LV+ YT S E K YVDL
Sbjct: 295 LPEP---LEMSVYQNLSLS-ELSGALVVAQYTDYRSAEIKSYVDL 335
>04_04_0014 +
22158441-22158669,22158782-22158878,22159264-22159461,
22159907-22160141,22160383-22160710,22160798-22161068,
22161169-22161424,22161508-22161964,22162096-22162286
Length = 753
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 471 RGPSGRLQYTGNGTFLIK-KLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHI 626
+G +G TG T ++ + P ++ + L L+AGG GI+P L ++ I
Sbjct: 424 QGRNGSESETGRITACVEGPYGHESPYHLMYENLILVAGGIGISPFLAILSDI 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,823
Number of Sequences: 37544
Number of extensions: 373468
Number of successful extensions: 847
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -