Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m17
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical...   235   2e-62
AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical...   222   2e-58
Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    28   7.0  
U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AC006783-1|AAF60677.1|  143|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical
           protein T05H4.5 protein.
          Length = 309

 Score =  235 bits (576), Expect = 2e-62
 Identities = 107/176 (60%), Positives = 137/176 (77%)
 Frame = +3

Query: 147 TLVDSNVKYALPLIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAY 326
           TLVD +VKY LPLIE+ EISHDTR+FR GLPS  H+LGLPIGQH++L+A I+  +++R Y
Sbjct: 43  TLVDDSVKYPLPLIEKFEISHDTRKFRFGLPSKDHILGLPIGQHVYLTANIDGKIIVRPY 102

Query: 327 TPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGN 506
           TPVSSDED G+VDL++KVYFKN + KFPEGGK+SQ+L ++KI DTI+ RGP G + Y G+
Sbjct: 103 TPVSSDEDLGFVDLMVKVYFKNTNEKFPEGGKMSQHLESLKIGDTINFRGPQGNIVYKGH 162

Query: 507 GTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFAN 674
           G F IK  +K  P   V K L++IAGGTGI PMLQ++  I  D  D T+++LLFAN
Sbjct: 163 GLFSIKADKKAEPKNRVFKHLSMIAGGTGITPMLQVIAAILRDPTDTTQIRLLFAN 218


>AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical
           protein T05H4.4 protein.
          Length = 303

 Score =  222 bits (542), Expect = 2e-58
 Identities = 100/176 (56%), Positives = 131/176 (74%)
 Frame = +3

Query: 147 TLVDSNVKYALPLIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAY 326
           TL D +VKY LPLIE+ EISH+TR+FR GLPS  H+LGLPIG H++LSA I   L++R+Y
Sbjct: 37  TLEDDSVKYLLPLIEKFEISHNTRKFRFGLPSKDHILGLPIGHHVYLSANIGGKLIVRSY 96

Query: 327 TPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGN 506
           TPVS D D GYVDL++KVYFKN H +FP+GGK+SQ+L ++KI DT+  RGP G + Y G+
Sbjct: 97  TPVSCDLDLGYVDLMVKVYFKNTHERFPDGGKMSQHLESLKIGDTVSFRGPHGSIIYKGS 156

Query: 507 GTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFAN 674
           G F ++  +K  P     K L++IAGGTGI PMLQ++  I  D  D T+++LLFAN
Sbjct: 157 GLFTVRMDKKAEPKNRFFKHLSMIAGGTGITPMLQVIAAILRDPIDATQIRLLFAN 212


>Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical
           protein F28D1.6 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 207 HDTRRFRLGL-PSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKG 356
           HDT +   G  P P  V   P      L  + +DD  ++  TP  S E+ G
Sbjct: 137 HDTEKPSDGTTPEPPQVFTKPSSMWDFLGDEDDDDTTVKVTTPAPSKEEPG 187


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 498 TGNGTFLIKKLRKD--PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTE 653
           T N T  ++K  KD  PP  V+   L +IAG   +  +L L+  + T ++DR+E
Sbjct: 719 TDNATVWVRK-HKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSE 771


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 498 TGNGTFLIKKLRKD--PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTE 653
           T N T  ++K  KD  PP  V+   L +IAG   +  +L L+  + T ++DR+E
Sbjct: 719 TDNATVWVRK-HKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSE 771


>U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical
           protein T19H12.6 protein.
          Length = 619

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
 Frame = +3

Query: 198 EISHDTRRFRLGLPSPQHVLGLPIGQHIHLS--AKIND------DLVIRAYTPVSSDEDK 353
           EI  DT+    G PS   VL        ++S  AK+ND       L+ +   P+     K
Sbjct: 437 EIDVDTKVCGPGSPSSFAVLANTYLATKNMSNLAKVNDVLRSSMGLISKIADPMFVKSSK 496

Query: 354 GYVDLVIKVY------FKNVHPKFPEGGKLSQYL---NNMKINDTIDVRGPSGRLQYTGN 506
            Y + + K         KN+   F E G    ++   NNM ++  + +    G L Y+ +
Sbjct: 497 KYTEELAKTSKRSSSEAKNLAVNFKEDGSTEVFVIDENNMTVSVLLSLGDDFGSLIYSSS 556

Query: 507 GTFLIKKLR 533
           G F   KLR
Sbjct: 557 GFFWNNKLR 565


>AC006783-1|AAF60677.1|  143|Caenorhabditis elegans Hypothetical
           protein Y48D7A.1 protein.
          Length = 143

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 462 IDVRGPSGRLQYTGNGTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPML 608
           I+ + PSG+++Y G   FL      D P     KK  L++ G    P +
Sbjct: 87  INKKKPSGQVRYLGKNNFLCSFASSDFPNIFQKKKQLLVSKGVYQEPFV 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,883
Number of Sequences: 27780
Number of extensions: 327155
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)