Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m16
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    27   1.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   7.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.6  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   7.6  

>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +2

Query: 314 DPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASRVLEEVAKGAVH 493
           + Y IVF+E+  S ED+   +    +S     + ++D L + +V+  S+ +E     A+ 
Sbjct: 288 EKYPIVFIEDPFSEEDWGAFSY---MSSKTKVEVIADDLTVTNVKRLSKAIELKCANALL 344

Query: 494 VKLTQNG 514
           VK+ Q G
Sbjct: 345 VKINQIG 351


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 344 TLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASRVLE 469
           +L+   F+  +NE       L  NL D  Y P++E  S  LE
Sbjct: 615 SLAASKFNDDDNERLFPSQLLPGNLHDQFYSPTIEKISDELE 656


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 426  LCTCLPSKMPQEYSRRSPKELFM*NSPKTDSLQPLXDKK 542
            L  C  S   +  S  SP +  + NSP T + +PL D+K
Sbjct: 1517 LIDCFMSLYNEVKSSISPLDANIPNSPSTITAKPLNDEK 1555


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 278 GFSEILNNELKDDPYVIVFLEETL 349
           GF E+L  EL+ D +V++ L  TL
Sbjct: 604 GFWEVLTEELQKDVHVLLSLVSTL 627


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 410 HTGTESKYHLRYFYVKNLRPIRF 342
           + G +S  H R+  VKN+ PI+F
Sbjct: 289 YNGLDSSKHPRWDRVKNIDPIKF 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,558
Number of Sequences: 5004
Number of extensions: 44296
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)