Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m16
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0201 + 26687369-26689228                                         30   1.5  
11_03_0210 - 11693750-11693797,11694017-11694094,11694285-116943...    28   5.9  
11_04_0226 + 15092313-15092873                                         27   7.7  

>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 80  KTCENCHKNIEKWAKTSDHRSC 15
           +TCENC K    W    DH  C
Sbjct: 118 RTCENCGKEFTSWKTLLDHGRC 139


>11_03_0210 -
           11693750-11693797,11694017-11694094,11694285-11694371,
           11694751-11694884,11695021-11695093,11695352-11695408,
           11697295-11697378,11698748-11698843,11699133-11699498
          Length = 340

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +2

Query: 338 EETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPS-----VEDASRVLE 469
           E+ +  ++F+    +   S+P+L++ + D  Y PS     VE+A RVLE
Sbjct: 256 EQIMQSKEFTASYVQVRGSMPFLWEQIVDLTYKPSFDVVRVEEAPRVLE 304


>11_04_0226 + 15092313-15092873
          Length = 186

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 228 LLDKSPHKNTGTVDALATLRTSNGNSKRQNAIF 130
           +LD+ P +NT T +A+ T  T+ G+     A+F
Sbjct: 25  VLDRMPDRNTVTCNAMLTGYTAAGDMANAEAVF 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,458
Number of Sequences: 37544
Number of extensions: 258544
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)