Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m08
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.5  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   4.6  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.6  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.0  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 541  LPEPKAVYPDATPALPEDAEKKPPRLGSR 627
            +P P A+ P  TP LP  + + PP   +R
Sbjct: 1040 VPSPSALSPSVTPQLPPVSSRLPPVSATR 1068


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 85  KLLV*YNLNKTMV-VTADV-YLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYML 258
           KL + YN+  T +  T+D+ +  +D  LT    N        G F +  Y E +N + +L
Sbjct: 415 KLSLDYNVQMTSINATSDMLFAADDRRLTAFTFNSQEDIAKFGEFDISTYAEGLNFKSLL 474


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 266 KKRMILENVSTRVRQSLPVHWSSSGK*RRPAWLSLISTLTV 388
           K   ++ENVS     +  VHW  S +  RPA  +++ T TV
Sbjct: 719 KWEFLVENVSRIYHMAAEVHWMKSYQELRPA--NVLGTKTV 757


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +1

Query: 469 LNLP---RPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPE 591
           +NLP    P  GYF     + +  P P+  P A Y  A+  + E
Sbjct: 227 VNLPGAQEPNRGYFSPMHTYSSAVPGPISVPSAPYGRASSTIAE 270


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 334 FRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKL 471
           F K+K + +  F    NC  K   ++      K  GV  QC +EKL
Sbjct: 558 FEKLK-SWMPGFGDPKNCTGKRVDEHKINSLVKEFGVSLQCFVEKL 602


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 538 PLPEPKAVYPDATPALPEDAEKKPP 612
           P+P P ++ P A P+LP  A    P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLP 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,603
Number of Sequences: 5004
Number of extensions: 56387
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)