Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m08
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0669 + 10295160-10295356,10296003-10296045                       39   0.003
12_01_0877 - 8415186-8415272,8415696-8416310                           29   4.8  
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242...    29   4.8  
05_01_0206 + 1487034-1489430                                           29   4.8  
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853...    29   4.8  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     28   6.3  
07_03_1432 - 26508135-26508881,26509301-26509708                       28   8.3  
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207           28   8.3  
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096...    28   8.3  

>03_02_0669 + 10295160-10295356,10296003-10296045
          Length = 79

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 184 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLE 330
           + S L A S H+   C   N  ++ C++++ +P+KC+ +G+ V  C  +
Sbjct: 17  TSSVLMAASKHIAVRCRPENVAFLNCKKKDPNPQKCLEKGRQVKRCVFD 65


>12_01_0877 - 8415186-8415272,8415696-8416310
          Length = 233

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 475 LPRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKP 609
           LPR       EA +   + PKP   P+   P+  P LP   E  P
Sbjct: 142 LPRTEITDDIEATLPKKEEPKPPSPPREAEPEPEPPLPPPEEPTP 186


>06_01_0336 +
           2427017-2427121,2427585-2427662,2427889-2427960,
           2428105-2428671,2428822-2428935,2431308-2432246
          Length = 624

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 556 AVYPDA--TPALPEDAEKKPPRLGSRFYWM 639
           A YP A  +PAL  DA  KPP +G R +++
Sbjct: 363 AAYPAAAASPALAFDASSKPPLIGGRPFFL 392


>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
 Frame = +1

Query: 478 PRPGFGYFCEA-------RVHDTKRPKPLPEPKAVYPDATPA 582
           P P  G FC+        R  DT  P P P P+   P ATP+
Sbjct: 310 PLPDSGRFCKVSGDVICRRFCDTSPPPPPPSPRTPSPPATPS 351


>02_04_0191 -
           20783143-20784365,20784453-20784597,20784977-20785345,
           20786164-20786250,20786405-20786603,20786733-20786818
          Length = 702

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 514 VHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPRL 618
           V     P PLP P  V P   P  P   +  PP+L
Sbjct: 312 VKSVTAPSPLPVPVHVVPVPVPVQPVQVQLPPPQL 346


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 529 RPKPLPEPKAVYPDATPALPEDAEK---KPPRLGSR 627
           +PKP P+PK   P   P  P+   K   KPP+ G +
Sbjct: 171 KPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPK 206



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 529 RPKPLPEPKAVYPDATPALPEDAEK-KPPRLGSR 627
           +PKP P P    P   P  P+   K KPP+ G +
Sbjct: 162 KPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPK 195


>07_03_1432 - 26508135-26508881,26509301-26509708
          Length = 384

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
 Frame = +1

Query: 544 PEPKAVY--PDATPALPEDAEKKPPRLGSRFYWMTE*C 651
           P P   Y  P  TP  P  A   PP LG R  + +  C
Sbjct: 63  PSPPTTYLPPSPTPPSPAPASPSPPSLGLRVGYYSSSC 100


>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
          Length = 153

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 223 KYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKS 399
           K C+T+ ++Y  C     +PR C     A   C  +   ++ K C    +  S CL ++
Sbjct: 92  KKCKTLIDKYEECSNPPKEPRLCPAHELAFEKCLQKNVGEI-KVCQFWMDMMSKCLRRN 149


>02_05_0418 +
           28807763-28807777,28809216-28809242,28809588-28809621,
           28809909-28810154,28810518-28810948,28812759-28813418
          Length = 470

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 529 RPKPLPEPKAVYPDAT 576
           +P+P PEPKA Y +AT
Sbjct: 395 KPEPEPEPKAAYDEAT 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,975
Number of Sequences: 37544
Number of extensions: 376514
Number of successful extensions: 1296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)