Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m08
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical ...   114   7e-26
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    36   0.028
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    35   0.065
Z81536-5|CAB04366.1|  297|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    30   1.9  
Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81557-8|CAD90179.1|  353|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81041-14|CAN99675.1|  684|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z81041-13|CAN99674.1|  647|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    28   7.5  
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41559-10|AAC24264.2|  371|Caenorhabditis elegans Hypothetical p...    27   9.9  
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    27   9.9  

>AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.5 protein.
          Length = 183

 Score =  114 bits (274), Expect = 7e-26
 Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 1/159 (0%)
 Frame = +1

Query: 118 MVVTADVYLPEDSELTV-QEVNLSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCI 294
           M +T D + P D ELTV QE+ LS   L + + ++ K+CE   NE+ML R+E  DPR  +
Sbjct: 1   MSITKDTHFPSDEELTVPQEITLSTPWLKSIAPYMAKHCEKEANEFMLRRKEAEDPRAVL 60

Query: 295 NEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLN 474
            EG A+TAC + F + +K++CL +  + + C+D+SS       C   Q   D C+   LN
Sbjct: 61  KEGAALTACGVNFLQSLKRSCLPQTQKLAECVDQSSAKLYMSKCHDDQKELDACVEANLN 120

Query: 475 LPRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPE 591
           L RP  GYF +  V+D+    P  + +    +A   L E
Sbjct: 121 LTRPKLGYFSKLHVYDSATAAPEVKLRDYKAEAAKVLNE 159


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 11/163 (6%)
 Frame = +1

Query: 160 LTVQEVNLS---GSTLYAGSFHLGKYC-ETINNEYMLCRQEENDPRKCINEGKAVTACTL 327
           LT+Q+ + S   G     G+   G  C  TI + Y+L    E      +N+ + + A T 
Sbjct: 216 LTLQQNDASVAKGGKTGDGNKGKGPVCYRTIRHRYLLGADFEEHDVDSVNDCRCLCAATY 275

Query: 328 EFFRKVKKTCLAEFNQYSNCLDKSS--GDYAFRHCRKTQGVFDQC----MLEKLNLPRPG 489
               K  K    +F   +  L+K +  G Y     RKT   +  C    +LE  +   P 
Sbjct: 276 LPNNKKNKCMSFQFRNKTCTLNKGNHLGQYDLIEQRKTLYQYVGCDPEILLETASSKCPN 335

Query: 490 FG-YFCEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPR 615
           F     E +  DTK+  P  +PK     A     E  E K P+
Sbjct: 336 FKPKSAEKKKPDTKKETPTKKPKVELVTAKTVEGEKKETKKPK 378


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 250 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 348
           Y++C  + N P  C+N G A+ +C  ++FR +K
Sbjct: 146 YVICNYQLNVPYNCVNVGCAMNSCFRQYFRPLK 178


>Z81536-5|CAB04366.1|  297|Caenorhabditis elegans Hypothetical
           protein F40D4.6 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 250 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 348
           Y++C  + N P  C+N G A+ +C  ++F   K
Sbjct: 149 YVICNYKLNIPYNCVNIGCAINSCYRQYFLSSK 181


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 250 YMLCRQEENDPRKCINEGKAVTACTLEFFRKVK 348
           Y  C  E   PR C+  G ++ AC+  F+ K K
Sbjct: 146 YYFCNFELTFPRNCLTIGCSINACSSRFWTKSK 178


>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +2

Query: 182 YLDQLYTLVPFIWENIVKPLTMSTCCVVKKRMILENVST 298
           + +++YT    ++  ++ P+ + T C +K +MI + +ST
Sbjct: 200 FAEEVYTDGVALFVEVLVPIALCTVCALKLKMITKEIST 238


>Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical
           protein F19B6.2a protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 103 NLNKTMVVTADVYLPEDSELTVQEVNLSGSTLYAGS 210
           N ++T VV   V+LP  ++  + E+N  G  L   S
Sbjct: 20  NYDQTFVVYGPVFLPNATQSKISEINYGGKILLPSS 55


>Z81557-8|CAD90179.1|  353|Caenorhabditis elegans Hypothetical
           protein F59A1.14 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 121 PLFYLSCITQAILN*LIFCRNKYDNSFHKI 32
           P++++     AIL    FCR+KYD   H +
Sbjct: 304 PMYFIKIYRMAILK--FFCRSKYDTRVHGV 331


>Z81041-14|CAN99675.1|  684|Caenorhabditis elegans Hypothetical
           protein C27A7.5e protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 103 NLNKTMVVTADVYLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYM 255
           NL K +++T    +P     +    NL G+ + AG+F + + C   NN+ M
Sbjct: 218 NLGKPVIITGS-QIPVAEVRSDGMENLIGALITAGNFDIPEVCVYFNNKLM 267


>Z81041-13|CAN99674.1|  647|Caenorhabditis elegans Hypothetical
           protein C27A7.5d protein.
          Length = 647

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 103 NLNKTMVVTADVYLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYM 255
           NL K +++T    +P     +    NL G+ + AG+F + + C   NN+ M
Sbjct: 181 NLGKPVIITGS-QIPVAEVRSDGMENLIGALITAGNFDIPEVCVYFNNKLM 230


>Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical
           protein C27A7.5c protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 103 NLNKTMVVTADVYLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYM 255
           NL K +++T    +P     +    NL G+ + AG+F + + C   NN+ M
Sbjct: 249 NLGKPVIITGS-QIPVAEVRSDGMENLIGALITAGNFDIPEVCVYFNNKLM 298


>Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.5a protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 103 NLNKTMVVTADVYLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYM 255
           NL K +++T    +P     +    NL G+ + AG+F + + C   NN+ M
Sbjct: 247 NLGKPVIITGS-QIPVAEVRSDGMENLIGALITAGNFDIPEVCVYFNNKLM 296


>Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 181 LSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCL 360
           ++GS L  GSF +G +C+ I   Y+L          C     ++ +   E+F+K + T +
Sbjct: 108 IAGSFLTGGSFVVGPFCKNI---YLLMLATFGMGIGCGLMRNSIISIQCEYFKKKRNTVM 164

Query: 361 A 363
           A
Sbjct: 165 A 165


>Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 181 LSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCL 360
           ++GS L  GSF +G +C+ I   Y+L          C     ++ +   E+F+K + T +
Sbjct: 108 IAGSFLTGGSFVVGPFCKNI---YLLMLATFGMGIGCGLMRNSIISIQCEYFKKKRNTVM 164

Query: 361 A 363
           A
Sbjct: 165 A 165


>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -1

Query: 297 VDTFSRIILFLTTQHVL-IVNGFTIFSQMKGTS 202
           V TFS  ++ L TQ+V+ +V GF ++ +++G +
Sbjct: 199 VSTFSMFVVILLTQYVICLVCGFIMYRRIEGNA 231


>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
            ZK430.1 protein.
          Length = 1650

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 352  TCLAE-FNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNLP 480
            TC+   ++Q+++ + +S+GD   R+CR      D   L  LN P
Sbjct: 1226 TCIQRVYDQFASFVVESTGDVIIRYCRLIARFGDPSELLALNQP 1269


>U41559-10|AAC24264.2|  371|Caenorhabditis elegans Hypothetical
           protein C26B2.4 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 148 EDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYMLCRQEEN 276
           +D+E+ V E  +  + +Y    +L KYCE    E  +CR+EEN
Sbjct: 108 KDTEMGVAEA-MEMAQVY---MNLEKYCENNYCESNMCREEEN 146


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 532 PKPLPEPKAVYPDATPALPEDAEKKPPR 615
           PK  PEPK + P   PA+P+      P+
Sbjct: 273 PKKEPEPKKMAPKIPPAVPKSLVSPEPK 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,572,478
Number of Sequences: 27780
Number of extensions: 321148
Number of successful extensions: 1074
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)