Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4m06
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 29 0.75
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 27 2.3
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 27 3.0
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 27 3.0
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 4.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 4.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.0
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 4.0
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 26 5.3
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 26 5.3
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 26 5.3
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 7.0
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 25 7.0
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 9.2
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 28.7 bits (61), Expect = 0.75
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 224 GQVSKEEWISLWEKFSSSPSDWXNLYCKFIFQLEDASNDGSIDSEEF 364
G ++K E+ ++++F P + + +++F + DA +G ID +EF
Sbjct: 41 GHLNKSEFQKIYKQFF--PFGDPSAFAEYVFNVFDADKNGYIDFKEF 85
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 335 NDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSS--VSFAEFQELFKEYFASEDVNA 508
+ + ++ + S DK E ++ K S ++ +EFQ+++K++F D +A
Sbjct: 4 SQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSA 63
Query: 509 PGNFVF 526
+VF
Sbjct: 64 FAEYVF 69
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 200 SSADTDNDGQVSKEEWISLWEKFS-SSPS 283
SS DTD+DGQ+ EE K S SSPS
Sbjct: 245 SSEDTDSDGQMEDEEKSDSVHKSSFSSPS 273
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 219 TTAKSPKKSGFPSGRSFPAAPVTGXI 296
T AK+P K+ P+G+ P++P T +
Sbjct: 278 TFAKNPTKNSKPAGQVIPSSPFTSTL 303
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 239 EEWISLWEKFSSSPSDWXNLYCKFIFQLEDASNDGSIDSEEFSS 370
EEWI LW+ S + W + + F+L + G I S FSS
Sbjct: 100 EEWIELWDLESRT---WDLIQRLYSFRLSE--QQGHIQSHAFSS 138
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 39 TFSPLSSTPMAAEPLIKRTLNLPLKGYPNREAGVL 143
TF+ SS P + P +R +++ ++ PN + G++
Sbjct: 876 TFTVESSQPFSLSPGERREIHIKIRAKPNSQEGLI 910
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 138 LQPLDLDILSMASSKSFLSXVPLPXVSKKAVKTC 37
L LDL I S+ + SF +P P ++++ C
Sbjct: 201 LPQLDLSISSLYTLPSFFPQLPTPSFHRRSINLC 234
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 215 DNDGQVSKEEWISLWEKFSSSPSDWXN 295
DND Q + W S+ F+ P ++ N
Sbjct: 253 DNDSQTRRSSWSSIASAFNDFPEEFPN 279
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 398 AEAASAFQKLSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVFGKTSF 541
A A A++ L KG+ +S+ + +E F+S VNA + + G F
Sbjct: 311 AALAEAYEYLEKGEYQLSYDKAKESCLGSFSSPSVNARTHNLVGTFKF 358
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +3
Query: 213 PITTAKSPKKSGFPSGRSFPAA---PVTGXIYTASLYFNLRMLVMTGPSTARNSLRST 377
PI+ S G P S +A V AS FNL V P ARNS+ S+
Sbjct: 57 PISHVPSVGTRGIPRSYSMASAYPYQVNSNSMDASTAFNLNQDVADKPMLARNSIDSS 114
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 25.8 bits (54), Expect = 5.3
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1
Query: 169 LNFFVLSISSTPASRFGYPFNGKFKVLFIXGSAAXGVEESGENVQQLLLS 20
LN + +IS AS+ YP K LFI GS V S V +LL+
Sbjct: 36 LNVKLENISVVDASK--YPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLA 83
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +2
Query: 212 TDNDGQVSKEEWISLWE---KFSSSPSDWXNLY 301
T+ DG EE+ ++ KF++ P+ W N Y
Sbjct: 240 TEEDGDEKDEEYSDIFSIKGKFNTRPNAWQNAY 272
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/61 (26%), Positives = 20/61 (32%)
Frame = +2
Query: 317 QLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEYFASE 496
QLE + DSEE G D ++A S +E E SE
Sbjct: 736 QLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSE 795
Query: 497 D 499
D
Sbjct: 796 D 796
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 209 DTDNDGQVSKEEWISLWEKFSSSPSDWXNLYCKFIFQLEDASNDGSID 352
D +N Q KEEW + + + +PS + + + QL+D S +I+
Sbjct: 137 DFNNKDQFWKEEWSTEQYEIAENPSGYASA-LHTLTQLDDGSETNAIN 183
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 464 QELFKEYFASEDVNAPGNFVFG 529
++LF +F + + PG F FG
Sbjct: 212 EDLFNSFFGDQFFSGPGTFFFG 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,151
Number of Sequences: 5004
Number of extensions: 54456
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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