Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m05
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0348 - 2607315-2607424,2608634-2609030                           31   0.67 
07_01_1166 - 11025276-11025374,11025508-11026431                       29   2.7  
12_02_0985 + 25052753-25053691                                         29   3.6  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    29   4.8  
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173...    28   6.3  

>11_01_0348 - 2607315-2607424,2608634-2609030
          Length = 168

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 460 EKKQMCLIKRRETTISPLNMTLAARITPQNACLEVGVPLGGWSSGVACCPNC 615
           E   +C I  +  TI P ++ LA RI   + CLE  + L   +  ++  PNC
Sbjct: 106 EDTNLCAIHAKRVTIMPKDIQLARRIRGLHPCLEQKMSLA--TCLISLAPNC 155


>07_01_1166 - 11025276-11025374,11025508-11026431
          Length = 340

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -3

Query: 668 NA*HLPDAGASDTRNWCLQFGQHATPDDQPPRGTPTSKHAFCGVIRAARV 519
           N  HL  A ASD R     +G    PD +PPR  P S   F   +R A +
Sbjct: 133 NLEHLDFAYASDGR----YYGIGVNPDPRPPRPLPPSALRFAPTLRTAYI 178


>12_02_0985 + 25052753-25053691
          Length = 312

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 523 LAARITPQNACLEVGVPLGGWSSGVAC 603
           LA R  P   CL V  P GGW     C
Sbjct: 258 LAWRCAPNATCLNVQTPTGGWGHQCKC 284


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -3

Query: 605 QHATPDDQPPRGTPTSKHAFCGVIRAARVIFNGLIVVSRLLIKHICFFSGGQL 447
           ++  P  +P   +  +K A+C + +  R      +V  + L KHI F  G  L
Sbjct: 646 EYVNPPKRPDPQSSDTKKAWCPIHKTDRHSLEDCLVFKKSLEKHIAFEKGNTL 698


>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
            32917396-32917552,32917695-32917753,32918180-32918291,
            32918901-32919050,32919180-32919316,32919977-32920123,
            32920197-32920298,32920674-32920731,32920840-32920941,
            32921905-32921942,32922031-32922157,32922228-32922401,
            32922542-32922628,32923838-32923947,32924654-32924714,
            32925338-32925515,32925628-32925833,32926108-32926227,
            32927202-32927423,32927708-32927847,32927976-32928087,
            32928254-32928304,32928384-32928473,32928630-32928800,
            32928897-32929049,32929860-32930036,32930131-32930268,
            32930363-32930433,32930837-32930936,32931156-32931212,
            32931301-32931357,32931451-32931531,32931614-32931696,
            32931831-32931966
          Length = 1459

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 478  LIKRRETTISPLN-MTLAARITPQNACLEVGVPLGGWSSGVACCPNCRH 621
            +++++   +SPLN M++A +  PQ     +G+P G    G    P  ++
Sbjct: 982  VLRQKALNMSPLNNMSMATKAFPQKFATPIGLPNGEQKHGYETPPAAKY 1030


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,338
Number of Sequences: 37544
Number of extensions: 343802
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)