Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m05
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-9|AAK68669.1|   90|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear recep...    28   7.5  

>U28971-9|AAK68669.1|   90|Caenorhabditis elegans Hypothetical
           protein B0244.11 protein.
          Length = 90

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -3

Query: 560 SKHAFCGVIRAARVIFNGLI---VVSRLLIKHICFFSGGQLSDPPTLFPEATAHT 405
           + H F  ++ A+R  F  L+   V+S  L + +CF SG   S  P   P   +HT
Sbjct: 7   ANHCFLSLLLASRFHFKPLLRNRVLSLPLFQFVCFISGSSSSSFPYSQPVFISHT 61


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 377 TVRLKHEH-SLNSSVFTFSTIYIPQ*TFYVINFVFKMKVI 261
           T+ + H H SLN   F F  I+ P   F+ + FVF+  ++
Sbjct: 374 TICVSHHHLSLNLKFFFFYKIFFPNSKFHPLLFVFQHSIL 413


>Z81496-11|CAB04069.2|  448|Caenorhabditis elegans Hypothetical
           protein F09C6.9 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 496 TTISPLNMTLAARITPQNACLEVGVPLGGWSSGVACCPNCRHQL-RVSLAPASGKC 660
           +T SP   ++ +R+     CL  G    G+   VA C  C+    R+ L+  S  C
Sbjct: 31  STSSPSKKSIGSRVERPTECLVCGRSAHGYHYNVASCNGCKTFFRRMCLSGRSFSC 86


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 510 IKYDSCSANYPTKCVLGSRC 569
           I Y  CS N PT C+ G +C
Sbjct: 91  IGYVECSQNNPTNCITGYQC 110


>AY204204-1|AAO39205.1|  448|Caenorhabditis elegans nuclear receptor
           NHR-116 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 496 TTISPLNMTLAARITPQNACLEVGVPLGGWSSGVACCPNCRHQL-RVSLAPASGKC 660
           +T SP   ++ +R+     CL  G    G+   VA C  C+    R+ L+  S  C
Sbjct: 31  STSSPSKKSIGSRVERPTECLVCGRSAHGYHYNVASCNGCKTFFRRMCLSGRSFSC 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,691
Number of Sequences: 27780
Number of extensions: 306864
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)