Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4m04
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.5
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.5
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 26 4.7
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 4.7
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 26 6.2
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.2
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 26 6.2
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 26 6.2
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 6.2
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 8.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 8.2
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 8.2
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 8.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 8.2
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 407 NVESEKQLLSPPSTTVVTGTDYSYIDGRVLPATTYQNN-GQPYVITTQRLQQIRSNFM 577
N+E+EKQ L+ + + + ++ V ++ N G+PY+IT +LQ+ F+
Sbjct: 9 NLENEKQFLAEIDELLTIPYEKNELEIGVSKFLSFINKYGEPYLITEFQLQRCMEKFL 66
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 467 DYSY--IDGRVLPATTYQNNGQPYVITTQRLQQIRSNFMYW 583
D++Y I GR PA +Q QP++I ++ + + YW
Sbjct: 288 DFAYWSISGRCSPAFFFQLLIQPFLINLEKRIPLLRKYHYW 328
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 121 FNTHCSSFFHAFVVIVI 71
F+ HC+SFF +FV++ +
Sbjct: 135 FDVHCNSFFPSFVLLYV 151
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 326 RSGKYQLNDGL-VGEEPVNLEAVDFNSNNVESEKQLLSPPSTTV 454
+S K QL D + V + L+ FN + E++K L PPS V
Sbjct: 173 QSPKGQLRDNISVPNQQDGLDPEVFNQQSKETKKSLQVPPSRNV 216
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 263 DETFEETSPVELLPDTENLEVRSGKYQLNDGLVGEE-PVNLEA 388
D T E SP++ PD + EV+S + + +E PV+L+A
Sbjct: 316 DHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQETPVHLKA 358
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 185 VNDTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPDTEN 316
V+ E SVT VVE ++ V+E E + + E EL+P + N
Sbjct: 103 VSPFELAASVTSQDVVEADSLVEENELQAWLEKQ--ELVPSSSN 144
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 413 ESEKQLLSPPSTTVVTGTDYSYIDGRVLPATTYQNNGQPYVI 538
E + LL+ T T ++ YI VL + YQ N PY++
Sbjct: 136 EENETLLNTNLTLSSTNREFYYIS-EVLESLHYQGNKDPYLL 176
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 173 QDEIVNDTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPDTENL 319
+DEI ++ S +S Q+ +L+ VKE++ + +++ ++ L D L
Sbjct: 92 RDEIEHEVSSAISSCIHQIAKLQEIVKEQQSQIPKKSGWLQGLRDPSKL 140
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 206 VSVTEAQVVELETDVKEKEDETFEETSPVELLPDTE 313
+ V E + +E T VKE E E L PD+E
Sbjct: 154 IDVEEKETIEPTTPVKEVETTAHAEEEKGPLTPDSE 189
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 191 DTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPDTENLEVRSGKY 340
D E + Q+ E+E KE ++E E + +LP +R G +
Sbjct: 283 DQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPILPPKNQEPIRMGGF 332
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 8.2
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Frame = +2
Query: 185 VNDTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPD--TENLEVRSGKYQLND-G 355
+ DT E V +E E ++++PVELL D ++N + + ++
Sbjct: 956 IADTRRNQDAPEKHVPVIEIQSSRPSLEKTDQSTPVELLIDSHSQNSQNEEKRSRMKFWA 1015
Query: 356 LVGEEPVNLEAVDFNSNNVESEKQLLSPPSTT 451
+ N E + + V +LSP STT
Sbjct: 1016 FPHHKAENYEQISDTNIPVIETNVMLSPSSTT 1047
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 245 DVKEKEDETFEETSPVELLPDTENLEVRSGKYQLNDGLVGEEPVNLEAVDFNSNNVESEK 424
D+K ++DE EE PV+ P ++ + ++ + + E+ V E + + V K
Sbjct: 58 DLKPEDDEVDEEVVPVKKKPSKKSKKAKANAF---EAFADEQSVEEEEEEDSEKPVRKNK 114
Query: 425 Q 427
+
Sbjct: 115 K 115
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 135 KTNLILTPIVPVSFTLLWSSLFGRLIGFFIRSQQRQVP 22
K NL+LTP V F +L ++LF ++ F+ +S VP
Sbjct: 397 KRNLLLTPFVVPGF-MLAAALFFNMV-FWSKSSSSTVP 432
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +2
Query: 464 TDYSYIDGRVLPATTYQNNGQPYVITTQRLQQIRSNFMYWFYDQGGSDNIGDYQRDIHTS 643
+D ++ D R N P + + + SN + +G + N+GD + +
Sbjct: 509 SDSNFSDPRFDDLKYLSPNSSPRFVASDGPNRPASNGRSSLFSRGRASNLGDVGLRLPSP 568
Query: 644 TPQIH 658
+P+IH
Sbjct: 569 SPRIH 573
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 185 VNDTESTVSVTEAQVVELETDVKEKEDETFEE 280
VN S+ S +E Q+ + VK+KE+E + E
Sbjct: 148 VNYNSSSESESEEQISKATKKVKQKEEEEYVE 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,050
Number of Sequences: 5004
Number of extensions: 57693
Number of successful extensions: 216
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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