Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m04
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.94 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.94 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   8.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   8.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 224 QVVELETDVKEKEDETFEETSPVELLPDTENLEVRSGK 337
           +V+E +T    +ED+   E +   LLP  E +E  + K
Sbjct: 19  EVIETDTKYNGREDQIPREMNTERLLPYVEIIEQPASK 56


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 224 QVVELETDVKEKEDETFEETSPVELLPDTENLEVRSGK 337
           +V+E +T    +ED+   E +   LLP  E +E  + K
Sbjct: 19  EVIETDTKYNGREDQIPREMNTERLLPYVEIIEQPASK 56


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 TYQNNGQPYVITTQRLQQIRSNFMYWFYD 592
           TYQ   +PYV  T  + QIR   +Y+F++
Sbjct: 173 TYQCCPEPYVDVTFTI-QIRRRTLYYFFN 200


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 TYQNNGQPYVITTQRLQQIRSNFMYWFYD 592
           TYQ   +PYV  T  + QIR   +Y+F++
Sbjct: 173 TYQCCPEPYVDVTFTI-QIRRRTLYYFFN 200


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 TYQNNGQPYVITTQRLQQIRSNFMYWFYD 592
           TYQ   +PYV  T  + QIR   +Y+F++
Sbjct: 173 TYQCCPEPYVDVTFTI-QIRRRTLYYFFN 200


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 TYQNNGQPYVITTQRLQQIRSNFMYWFYD 592
           TYQ   +PYV  T  + QIR   +Y+F++
Sbjct: 173 TYQCCPEPYVDVTFTI-QIRRRTLYYFFN 200


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 TYQNNGQPYVITTQRLQQIRSNFMYWFYD 592
           TYQ   +PYV  T  + QIR   +Y+F++
Sbjct: 173 TYQCCPEPYVDVTFTI-QIRRRTLYYFFN 200


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 TYQNNGQPYVITTQRLQQIRSNFMYWFYD 592
           TYQ   +PYV  T  + QIR   +Y+F++
Sbjct: 173 TYQCCPEPYVDVTFTI-QIRRRTLYYFFN 200


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 TYQNNGQPYVITTQRLQQIRSNFMYWFYD 592
           TYQ   +PYV  T  + QIR   +Y+F++
Sbjct: 241 TYQCCPEPYVDVTFTI-QIRRRTLYYFFN 268


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 506 TYQNNGQPYVITTQRLQQIRSNFMYWFYD 592
           TYQ   +PYV  T  + QIR   +Y+F++
Sbjct: 241 TYQCCPEPYVDVTFTI-QIRRRTLYYFFN 268


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 430 PLATKYYGRHRN*LFL 477
           P+ATKY  R+ + +FL
Sbjct: 111 PIATKYLRRYEDNIFL 126


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 430 PLATKYYGRHRN*LFL 477
           P+ATKY  R+ + +FL
Sbjct: 126 PIATKYLRRYEDNIFL 141


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 440 PSTTVVTGTDYSYIDGRV 493
           PS  V   +DYSY+D ++
Sbjct: 286 PSVVVSDYSDYSYLDEKL 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,442
Number of Sequences: 438
Number of extensions: 4146
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)