Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4m03
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648...    31   0.67 
10_01_0105 + 1287423-1289924                                           30   2.0  
08_01_0876 - 8598664-8599374                                           29   2.7  
05_01_0213 - 1606383-1606816,1607695-1608355                           29   2.7  
03_05_0447 - 24421442-24422767                                         29   3.6  
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    29   4.7  
12_02_0758 - 22858221-22858367,22859362-22859460,22859505-228595...    28   8.3  

>06_03_1343 -
           29463880-29464054,29464460-29464611,29464734-29464889,
           29465010-29465316,29465411-29465527,29465600-29465934
          Length = 413

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 272 WST*VALKYGISNWNTGISYCEGICPLPGIHFEIAA 165
           W T   L+YG+  WN G+    G C L G +  I A
Sbjct: 219 WLTSAMLQYGLETWNLGVICLIGNCFLMGAYLVIQA 254


>10_01_0105 + 1287423-1289924
          Length = 833

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 600 FRQPLRCALVIRVNVEDGQTPGQVCERESRTQVEI 496
           FR P    L+I  N   GQ PG +CE E+   +++
Sbjct: 447 FRAPNLENLIISSNYITGQVPGSICESENMKHLDL 481


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +2

Query: 116 STGPATWTITNASPT---TWPRSRNVSRAEGRSPR----STRYRC 229
           ++GP  WT+  A+P    T P+SR   R   RSPR    + R RC
Sbjct: 152 ASGPRRWTMDGAAPLLPETSPKSRRGRRGGRRSPRRGPRTRRRRC 196


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 702 TTEVAECSADE-GPRQPVPLSEDVLSLVNVQQGQIFRQP 589
           TT  + CS++E GP  P P SE++    N Q  +   QP
Sbjct: 200 TTTTSSCSSEEVGPSSPSPTSEEIRLANNQQSSRRKLQP 238


>03_05_0447 - 24421442-24422767
          Length = 441

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 668 DLASQFLFPKMCSLS*MCSRVRSLDNHCAVRWSLGLMWKMGRPPARSANVKAEHKSKLLP 489
           D A + +    C+     + VRS+D   A+  + G +  MG  PA +A     H  +  P
Sbjct: 211 DFALRDVCAATCAAGSTAAAVRSVDGRTAIAAASGGVAAMGN-PAAAAITHVLHNKQEFP 269

Query: 488 LSNTVVSLI 462
           L+ TV  ++
Sbjct: 270 LATTVDDIL 278


>01_06_1303 -
           36132588-36132710,36133879-36134103,36134318-36134713,
           36135352-36135547,36135591-36135740,36135818-36135924,
           36135987-36136094,36136354-36136435,36136436-36136536,
           36136778-36136996,36137455-36137583,36137665-36137742,
           36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 259 TYVDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 387
           TYV   +I  NH   R+ EF    + L     ++C W+    N
Sbjct: 139 TYVIPGIINYNHS--RIDEFIKKAQDLLDPTVLECAWMELSEN 179


>12_02_0758 -
           22858221-22858367,22859362-22859460,22859505-22859557,
           22859674-22859728,22860204-22860284,22860779-22861213
          Length = 289

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 467 G*RQCLIRATISTCVRLSRSQTW-PGVCPSSTLTLMTNAQRSGCLKI*PC 613
           G R  L  ATIS+   LSR +TW P +   +T + + N+ R  CL+   C
Sbjct: 93  GGRTSLPCATISSPQALSRKETWTPYLLAVATNSSIGNSTRHICLRRFAC 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,933,212
Number of Sequences: 37544
Number of extensions: 429971
Number of successful extensions: 1037
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)