Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4l22
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 206 1e-53
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171... 206 2e-53
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 195 2e-50
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934... 32 0.49
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317... 29 2.6
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 29 4.6
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 28 8.0
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 206 bits (503), Expect = 1e-53
Identities = 87/165 (52%), Positives = 122/165 (73%)
Frame = +1
Query: 190 IRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVESASFVSPKWVKQMSDSVDVM 369
++I EVGPRDGLQNE VPT +K+ELI K+VA+G+ VE+ SFVSPKWV Q++D+ DV+
Sbjct: 93 VKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVV 152
Query: 370 KNIQRVPGVNYPVLVPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCSVEEGLRRFKQ 549
+ I+ VP V +PVL PNL+G+E A +E+A+F + SE FS+ NLNC+++E L R+
Sbjct: 153 EGIKHVPDVRFPVLTPNLRGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHD 212
Query: 550 VADEAVRDGLRVRGYISCVVGCPYDGPIHPKNIAKITEQLIAMGC 684
V A + G+R+RGY+SCVVGCP +G IHP +A + ++L MGC
Sbjct: 213 VVTSAKKHGIRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGC 257
>11_01_0220 +
1717861-1717979,1718149-1718281,1718544-1718723,
1719046-1719126,1719259-1719422,1719518-1719654,
1719900-1720015,1720134-1720367
Length = 387
Score = 206 bits (502), Expect = 2e-53
Identities = 86/165 (52%), Positives = 122/165 (73%)
Frame = +1
Query: 190 IRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVESASFVSPKWVKQMSDSVDVM 369
++I EVGPRDGLQNE VP +K+ELI K+VA+G+ VE+ SFVSPKWV Q++D+ DV+
Sbjct: 93 VKIVEVGPRDGLQNEKSTVPASVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVL 152
Query: 370 KNIQRVPGVNYPVLVPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCSVEEGLRRFKQ 549
+ I+ VP V +PVL PNL+G+E A +E+A+F + SE FS+ NLNC+++E L R++
Sbjct: 153 QGIRHVPDVRFPVLTPNLRGFEAALAAGAKEVAVFASASESFSKSNLNCTIKESLVRYRD 212
Query: 550 VADEAVRDGLRVRGYISCVVGCPYDGPIHPKNIAKITEQLIAMGC 684
V A + G+R+RGY+SCVVGCP +G IHP +A + ++L MGC
Sbjct: 213 VVTSAKKHGMRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGC 257
>01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 195 bits (476), Expect = 2e-50
Identities = 84/175 (48%), Positives = 122/175 (69%)
Frame = +1
Query: 163 RSLSTVAPEIRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVESASFVSPKWVK 342
R + + ++I EVGPRDGLQNE VPT +K+ELI ++ +G+ VE+ SFVSPKWV
Sbjct: 749 RIIHDLPRSVKIVEVGPRDGLQNEKNIVPTHVKIELIQRLATSGLSVVEATSFVSPKWVP 808
Query: 343 QMSDSVDVMKNIQRVPGVNYPVLVPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCSV 522
Q++D+ DVM ++ + GV+ PVL PNLKG+E A +E+A+F + SE FS+ N+NC++
Sbjct: 809 QLADAKDVMDVVRNIEGVSLPVLTPNLKGFEAAVAAGAKEVAVFASASEAFSKSNINCTI 868
Query: 523 EEGLRRFKQVADEAVRDGLRVRGYISCVVGCPYDGPIHPKNIAKITEQLIAMGCY 687
+E L R+K VA A + +RGY+SCVVGCP +G + P N+A + ++L MGCY
Sbjct: 869 KESLARYKDVALAAKELKIPMRGYVSCVVGCPVEGYVPPSNVAHVAKELYDMGCY 923
>10_08_0506 +
18390892-18391373,18392699-18392798,18393152-18393485,
18393756-18393868,18394437-18394565,18394746-18394839,
18394942-18395025,18395265-18395896,18396662-18396951,
18397098-18397242,18397876-18397973,18398075-18398156,
18398607-18398612,18398845-18398928
Length = 890
Score = 31.9 bits (69), Expect = 0.49
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Frame = +1
Query: 262 VELISKI-VAAGIKNVESASFVSPKWVKQMSDSVDVMKNIQRVPGVNYPVLVPNLKGYET 438
+EL+S + + V S+++ V Q S S DVM G NL +T
Sbjct: 413 IELLSALSILQNSSVVSSSTYPKSSKVSQQSCSADVMGGTSFNDGKRKNSKKKNLLSNQT 472
Query: 439 AKQC-----NVEEIAIFPAGSEGFSQKNLNCS 519
C V I I G SQK NCS
Sbjct: 473 RHSCLSSKSEVSHITISSGSDAGLSQKAFNCS 504
>02_03_0065 -
14629676-14629804,14631119-14631247,14631383-14631736,
14631817-14632063,14632155-14632231,14632574-14632648,
14632721-14632822,14632966-14633084,14633538-14633627,
14634866-14635022,14635085-14635098,14635425-14635548,
14635628-14635678,14635793-14635891,14636962-14637072
Length = 625
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 241 FVPTDIKVELISKIVAAGIKNVESASFVSPKWVKQMS-DSVD 363
F PTD+K +I +V K++ES P WVK D +D
Sbjct: 31 FQPTDVKDPVIRPLVELDTKSLESMLPEVPHWVKNPDFDRID 72
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 412 VPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCS-VEEGLRRFKQVADEAVRDGLRV 585
VP+ +T NV+ + +F G G + + C V++ +R F + A+E + G+ V
Sbjct: 171 VPDSTQLQTGDIMNVD-VNVFLNGYHGGASRTFVCGEVDDSIRHFLKAAEECLEKGITV 228
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.9 bits (59), Expect = 8.0
Identities = 34/130 (26%), Positives = 52/130 (40%)
Frame = +1
Query: 238 KFVPTDIKVELISKIVAAGIKNVESASFVSPKWVKQMSDSVDVMKNIQRVPGVNYPVLVP 417
K V VEL VA ++++ + +SP+ V +S + VP V ++ P
Sbjct: 363 KLVFLSSPVELKVSAVAESERHLQESKEMSPE-VNIVSPPAVLQGFSPEVPSVCEKIVEP 421
Query: 418 NLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCSVEEGLRRFKQVADEAVRDGLRVRGYI 597
L + AK E + P C++E+ L + D + DGL I
Sbjct: 422 PLADFNQAKNVCSLETSSDP------------CTLEQHLANVSDLLDMSYIDGLM----I 465
Query: 598 SCVVGCPYDG 627
GCPYDG
Sbjct: 466 IPPSGCPYDG 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,094,640
Number of Sequences: 37544
Number of extensions: 311551
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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