Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4l21
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 71 1e-12
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 67 1e-11
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 56 4e-08
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 48 8e-06
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 42 7e-04
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 29 2.9
09_04_0733 - 19791745-19791906,19792072-19792173,19792246-197923... 29 3.9
04_03_0613 + 18034727-18036175 29 3.9
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 29 5.1
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 28 6.7
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 28 8.9
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 70.5 bits (165), Expect = 1e-12
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 31/167 (18%)
Frame = +2
Query: 107 IKAFEEVLDQDVIDMQQLQKLAFNGIPDDKGLRSLVWK-ILLHYLPQEKNARETTLIKKR 283
+ F L + V+D+ +L++LA G+PD G+R +VWK +LL YLP + L KKR
Sbjct: 98 VPEFTVALGRKVVDLAELRRLACQGVPDAAGVRPVVWKQLLLGYLPTDHALWAYELEKKR 157
Query: 284 QLYKQF--------------IEEIIVSPGGP----------------TDHPLNMSPDSSW 373
Y F +EE+ +S G +HPL++ S W
Sbjct: 158 SQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTGVLPRAEIVHDEHPLSLGKTSVW 217
Query: 374 STYFKDNEVLLQIDKDVRRLCPDISFFQSATEFPCPEVVNSNGIKRL 514
+ +F+++E + QID+DV+R P++ FF + + N +KR+
Sbjct: 218 NQFFQESETIEQIDRDVKRTHPEMQFFNGDSS---DALSNQESLKRI 261
Score = 35.5 bits (78), Expect = 0.044
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 666 EVVERMLFLYAKLNPGQGYVQGMN 737
E ++R+L ++AKLNPG YVQGMN
Sbjct: 256 ESLKRILTIFAKLNPGIRYVQGMN 279
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 67.3 bits (157), Expect = 1e-11
Identities = 42/115 (36%), Positives = 60/115 (52%)
Frame = +2
Query: 128 LDQDVIDMQQLQKLAFNGIPDDKGLRSLVWKILLHYLPQEKNARETTLIKKRQLYKQFIE 307
L + VID+ +L+ LA G+PD +R VWK+LL YLP ++ E L KKR Y F E
Sbjct: 29 LSKKVIDLDELRMLAAQGVPDGAAVRPTVWKLLLGYLPSDRALWEQELAKKRSQYAAFKE 88
Query: 308 EIIVSPGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCPDISFFQSATEF 472
E + +P Y +E++ QID+DV+R PD+ FF + F
Sbjct: 89 EFLSNP------------------Y---SEIIEQIDRDVKRTHPDMHFFCGDSSF 122
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 116 FEEVLDQDVIDMQQLQKLAFNGIPDD-KGLRSLVWKILLHYLPQEKNARETTLIKKRQLY 292
F+ L + V++M +L++LA G+PD +R LVWK+LL YLP E+ L KKR Y
Sbjct: 100 FKLALSKKVVNMGELRRLACLGVPDGGAAVRPLVWKLLLGYLPTERAFWPHELEKKRSQY 159
Query: 293 KQFIEEIIVSP 325
+ +E +++P
Sbjct: 160 SAYKDEFLLNP 170
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +2
Query: 239 PQEKNAR--ETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPDSSWSTYFKDNEVLLQI 412
P EK R E+ L++K++L I + + +HPL+ S W+ YF+++E+L QI
Sbjct: 170 PSEKIRRFEESKLLRKKELNSDKIGLLPRAKVTNEEHPLSFGKSSLWNQYFQESEILEQI 229
Query: 413 DKDVRRLCPDISFFQS 460
D+DV+R P++ FF +
Sbjct: 230 DRDVKRTHPEMPFFSA 245
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 648 AARLTGEVVERMLFLYAKLNPGQGYVQGMN 737
+A+ E + R+L +++KLNP YVQGMN
Sbjct: 244 SAKANQESLRRVLIIFSKLNPTIRYVQGMN 273
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 48.0 bits (109), Expect = 8e-06
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Frame = +2
Query: 200 LRSLVWKILLHYLPQEKNA----RETTLIKKRQLYKQFIEEIIVSPGGP----------T 337
LR + W++ L LP A R+ Y ++V P P
Sbjct: 14 LRGVRWRVDLGILPASPGASVDEHRRAAADSRRRYVSLRRRLLVDPHVPKEEGRSSNLIV 73
Query: 338 DHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCP-DISFFQSAT 466
D+PL+ +PDSSW +F+ E+ +D+D+ RL P D S+FQ+ T
Sbjct: 74 DNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPT 117
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 41.5 bits (93), Expect = 7e-04
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +2
Query: 320 SPGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVRRLCPDI-SFFQS 460
+P ++PL+ +P+S+W YF++ E+ +++D+ RL P++ +FFQ+
Sbjct: 67 APDLAVENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQT 114
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 536 RIARHVCAIVLCHCCLRPQDK 474
R+A+ VC I HCCL+P+DK
Sbjct: 629 RVAKAVC-IDEVHCCLKPEDK 648
>09_04_0733 -
19791745-19791906,19792072-19792173,19792246-19792331,
19792655-19792926,19793430-19793521,19793615-19793730,
19794206-19794389,19794467-19794599,19794981-19795075
Length = 413
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 672 VERMLFLYAKLNPGQGYVQGMN 737
+ER+L+ +A +P GYVQG+N
Sbjct: 200 LERILYTWAIRHPASGYVQGIN 221
>04_03_0613 + 18034727-18036175
Length = 482
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -1
Query: 543 LRTDCSTRLCNRFMPLLFTTSGQGNSVAD*KNDISGQSLRTSLSICNS 400
L T+ + LC+RF LL G S N I Q L S CNS
Sbjct: 49 LSTEDFSALCSRFPNLLKVEIGNSGSTPGNGNHIDNQGLFVLSSSCNS 96
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = +2
Query: 248 KNARETTLIKKRQLYKQFIEEIIVSPGGPTDHPLNMSPDSSWSTYFKDNEVLLQIDKDVR 427
K+ RE +L+KKR+ Q + S D L P Y DN + L+ R
Sbjct: 38 KSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFR 97
Query: 428 RLCPDISFFQSATEFPCPEVVNSNGIKR 511
+L +S +S P EV+ S + R
Sbjct: 98 KL---LSIERSP---PIEEVIQSGVVPR 119
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 672 VERMLFLYAKLNPGQGYVQGMN 737
+ R+L YA+ NP GY Q MN
Sbjct: 280 LRRLLLAYARHNPAVGYCQAMN 301
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 155 QLQKLAFNGIPDDKGLRSLVW-KILLHYLPQEKNARETTLIK 277
+L K + + DD+ LR +W K+ H + QEK + + K
Sbjct: 643 ELAKAEADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKK 684
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,050
Number of Sequences: 37544
Number of extensions: 352606
Number of successful extensions: 1101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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