Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4l19
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0806 + 27846204-27846497,27847309-27847683 51 9e-07
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 45 6e-05
03_01_0073 + 599626-599856,599960-600041,600646-600689,601303-60... 42 4e-04
11_06_0081 + 19886848-19888050,19888243-19888896 36 0.026
03_02_0352 + 7749902-7751788,7752547-7752615 34 0.079
02_01_0692 + 5179778-5181847 32 0.32
01_06_0658 - 30942890-30943054,30943159-30943266,30943448-309435... 31 0.56
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186... 29 3.9
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 6.9
02_02_0550 - 11413912-11414079,11414338-11414513,11414617-114146... 27 9.1
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402... 27 9.1
01_01_0874 - 6840708-6840947,6841063-6841149,6841217-6841281,684... 27 9.1
>03_05_0806 + 27846204-27846497,27847309-27847683
Length = 222
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2
Query: 179 IKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPVT 322
+ H + +GDT+ GIALKY + + I+R N + + ++LRE LLIP++
Sbjct: 78 LSHTVRRGDTVPGIALKYSIQVTDIKRFNNMMSDHGIYLRERLLIPIS 125
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +2
Query: 146 TCXHMKRXEEYIKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPVTK 325
T M +Y+ H + K DTL GIA+KYGV + I+R N L +F + L IP+
Sbjct: 57 TAPPMSSCGQYMLHRVGKLDTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLPG 116
Query: 326 DSP---FYENG 349
P + +NG
Sbjct: 117 RHPPSTYQQNG 127
>03_01_0073 +
599626-599856,599960-600041,600646-600689,601303-601411,
601498-601964
Length = 310
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 158 MKRXEEYIKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPV 319
M YI H + + DTL G+A+KYGV + ++R N L +F + L IP+
Sbjct: 50 MSSCGRYILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPL 103
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 35.9 bits (79), Expect = 0.026
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +2
Query: 179 IKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPVTKDSPFYENGERV 358
+ +++ + D + IA ++GV I AN + TD+++ LLIPV K P + ++
Sbjct: 204 VTYLVDEFDEVGAIAARFGVDAGNISAANEMAITDTIYPFTTLLIPV-KSKP---DVSQL 259
Query: 359 XELPPPNHRASXAGMPTRN 415
PPP A PT N
Sbjct: 260 RSPPPPPPPPPAAPAPTTN 278
>03_02_0352 + 7749902-7751788,7752547-7752615
Length = 651
Score = 34.3 bits (75), Expect = 0.079
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 383 RASXAGMPTRNSFSPGSPDEKKSFDEFLNRVDSSLADXXRHVEKTKENSEFVKDIDEGYV 562
+A+ AG P SPG ++ F E+ +D D R +++ + V I + Y+
Sbjct: 230 KAAPAGQPDFAMSSPGRGKRRRRF-EYTETLDVPARDVPRRLQQLAAKHKVVLCIRQKYI 288
Query: 563 RHRP 574
RH+P
Sbjct: 289 RHKP 292
>02_01_0692 + 5179778-5181847
Length = 689
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +2
Query: 179 IKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPVTKDSPFYENGERV 358
+ ++++ GDT+ IA ++ V + + AN L + ++ LL+P+ K++P +
Sbjct: 203 VTYLVTWGDTVSAIAARFRVDAQEVLDANTLTESSIIYPFTTLLVPL-KNAPTPDMLAPP 261
Query: 359 XELPPPNHRASXAGMP 406
+ PPP A P
Sbjct: 262 AQAPPPPAPAPPRAQP 277
>01_06_0658 -
30942890-30943054,30943159-30943266,30943448-30943598,
30943683-30943780,30943869-30944020,30944298-30944403,
30944499-30944588,30944668-30944813,30945396-30945695,
30945953-30946038,30947260-30947996
Length = 712
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 179 IKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPVTKDSPFYEN 346
+ +V GDT+Q ++ ++G +M+ I AN + D + + IP+ + +
Sbjct: 175 LSYVGVDGDTVQSLSSRFGASMDAIEAANGMAGPDPITTGKVYYIPLNSGEQMFSD 230
>03_01_0239 +
1859446-1860112,1861218-1861338,1861431-1861618,
1861710-1861804
Length = 356
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 176 YIKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPV 319
++ + + KG+ IA KYGVT + N++ L + + L +P+
Sbjct: 174 HLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPTKLQMGQILDVPL 221
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 329 SPFYENGERVXELPPPNHRASXAGMPTRNSFSPGSP 436
SP Y G P AS + PT S++PGSP
Sbjct: 1555 SPVYSPGPGYSPTSPSYSPASPSYSPTSPSYTPGSP 1590
>02_02_0550 -
11413912-11414079,11414338-11414513,11414617-11414629,
11414844-11414871,11415447-11415784
Length = 240
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 539 SRTHCFLLFFLHVALXQPMMSLLCSGIRQNSSSHRGFQ 426
S+ H LF L+ + + M + C +NSSSH Q
Sbjct: 164 SQVHFAQLFVLNARVLESMKFVFCKKAHKNSSSHNTTQ 201
>01_07_0128 +
41238510-41239146,41239420-41239461,41240076-41240297,
41240909-41241156,41241296-41241435,41241904-41242027
Length = 470
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 468 FRNSSKLFFSSGLPGEKLFLVGMP 397
FR++S +F S+G+P E + +G P
Sbjct: 217 FRSTSSVFLSAGVPTENILYLGGP 240
>01_01_0874 -
6840708-6840947,6841063-6841149,6841217-6841281,
6841976-6842096,6842207-6842350
Length = 218
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 425 PGSPDEKKSFDEFLNRVDSSLADXXRHVEKTKENSEFVKDIDE 553
PG+P S E+ N + SSL+D R + E S+ D DE
Sbjct: 32 PGAPSSSSSTGEWHNFMGSSLSDMYR--KPAAEKSDDTSDDDE 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,026,919
Number of Sequences: 37544
Number of extensions: 243101
Number of successful extensions: 606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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