Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4l19
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-1|AAC24252.1| 158|Caenorhabditis elegans Hypothetical ... 41 6e-04
Z79755-12|CAN86921.1| 142|Caenorhabditis elegans Hypothetical p... 35 0.041
Z79755-11|CAN86920.1| 209|Caenorhabditis elegans Hypothetical p... 35 0.041
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 31 0.88
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 31 0.88
AF016441-3|AAB65909.2| 744|Caenorhabditis elegans Hypothetical ... 30 1.5
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 28 6.2
AC006780-3|AAF60649.2| 425|Caenorhabditis elegans Hypothetical ... 28 6.2
Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 27 8.2
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 27 8.2
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 27 8.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 27 8.2
>AF000196-1|AAC24252.1| 158|Caenorhabditis elegans Hypothetical
protein B0041.3 protein.
Length = 158
Score = 41.1 bits (92), Expect = 6e-04
Identities = 27/104 (25%), Positives = 52/104 (50%)
Frame = +2
Query: 176 YIKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPVTKDSPFYENGER 355
Y + + DTL+ IALK+ ++ + RAN+L++ +LF+++++ IP+ N ++
Sbjct: 47 YTIYQVQTDDTLERIALKHNCSVSSLVRANKLWSPSALFMKQFIRIPIF-------NSQQ 99
Query: 356 VXELPPPNHRASXAGMPTRNSFSPGSPDEKKSFDEFLNRVDSSL 487
L P +P S E+KS + L R+D ++
Sbjct: 100 -PNLKPSLQETQCKIVPATTE-RVDSSREEKSMKDILQRIDRNI 141
>Z79755-12|CAN86921.1| 142|Caenorhabditis elegans Hypothetical
protein F43G9.2b protein.
Length = 142
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 176 YIKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPVTK 325
+I+ + GDTL +A+KY V + I+R N + + + IPV++
Sbjct: 39 FIERKVKNGDTLNKLAIKYQVNVAEIKRVNNMVSEQDFMALSKVKIPVSR 88
>Z79755-11|CAN86920.1| 209|Caenorhabditis elegans Hypothetical
protein F43G9.2a protein.
Length = 209
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 176 YIKHVMSKGDTLQGIALKYGVTMEXIRRANRLFATDSLFLREYLLIPVTK 325
+I+ + GDTL +A+KY V + I+R N + + + IPV++
Sbjct: 39 FIERKVKNGDTLNKLAIKYQVNVAEIKRVNNMVSEQDFMALSKVKIPVSR 88
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 30.7 bits (66), Expect = 0.88
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +2
Query: 323 KDSPFYENGERVXELPPPNHRASXAGMPTRNSFSPGSPDEKKSFDEFLNRVDSSLADXXR 502
KD+ Y + E EL P S A + S+SP S D+++S + +V + R
Sbjct: 2055 KDTREYSDEELAQELSPSEEHVSTAEIKDIKSYSPTSSDDERSSQK--GKVSPPIPQ-VR 2111
Query: 503 HVEKTKENSEFVKDIDEGYVRH 568
H SE + D+ H
Sbjct: 2112 HAISPSVASEVLSSHDDELAAH 2133
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 30.7 bits (66), Expect = 0.88
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +2
Query: 323 KDSPFYENGERVXELPPPNHRASXAGMPTRNSFSPGSPDEKKSFDEFLNRVDSSLADXXR 502
KD+ Y + E EL P S A + S+SP S D+++S + +V + R
Sbjct: 2055 KDTREYSDEELAQELSPSEEHVSTAEIKDIKSYSPTSSDDERSSQK--GKVSPPIPQ-VR 2111
Query: 503 HVEKTKENSEFVKDIDEGYVRH 568
H SE + D+ H
Sbjct: 2112 HAISPSVASEVLSSHDDELAAH 2133
>AF016441-3|AAB65909.2| 744|Caenorhabditis elegans Hypothetical
protein M03F8.3 protein.
Length = 744
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 86 LFDERVSIRESARPLXKYGXTCXHMKRXEEYIKH 187
LF+ER E AR + KYG R EE KH
Sbjct: 266 LFEERQKEHERARGIFKYGLDNLPSNRTEEIFKH 299
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 314 PVTKDSPFYENGERVXELPPPNHRASXAGMPTRNSFSPGS-PDEKKSFDEFLNRVDSSLA 490
P T DS N + ++PPP ++ S G P +P P+E K +E + + +
Sbjct: 352 PTTSDS----NSQVSEDIPPPKNKES--GTPPLKEKTPEPIPEEPKKVEEEVKKPEVPKN 405
Query: 491 DXXRHVEKTKENSEFVKDIDE 553
+ + E KE + V++ E
Sbjct: 406 EEPKMEEPVKEEAPKVEEKKE 426
>AC006780-3|AAF60649.2| 425|Caenorhabditis elegans Hypothetical
protein Y47D9A.5 protein.
Length = 425
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 522 SFVFSTCRXXSANDESTLFRNSSKL 448
S + + C S +DEST F+N+SKL
Sbjct: 35 SILLTGCNLTSFSDESTNFKNNSKL 59
>Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical protein
F54D1.6 protein.
Length = 1423
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 377 NHRASXAGMPTRNSFSPGSPDEKKSFDEF 463
N++ + GMPT N F+ S DE K F+ F
Sbjct: 1090 NNQGNNYGMPTENMFTT-SRDEDKKFEVF 1117
>Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical
protein F10B5.3 protein.
Length = 471
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 548 LYPSRTHCFLLFFLHVALXQPMMSLLCSGIRQNSSS 441
L P TH L F+H+A+ CSG+ ++SS
Sbjct: 397 LCPFSTHSTDLLFIHLAMQHAQELAQCSGLLADNSS 432
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 437 DEKKSFDEFLNRVDSSLADXXRHVEKTKENSEFVKDI 547
D K FDE + ++S+LAD ++++ + VKDI
Sbjct: 367 DSKPLFDE-MGHMESTLADIYKNLDGASRHKPVVKDI 402
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 437 DEKKSFDEFLNRVDSSLADXXRHVEKTKENSEFVKDI 547
D K FDE + ++S+LAD ++++ + VKDI
Sbjct: 353 DSKPLFDE-MGHMESTLADIYKNLDGASRHKPVVKDI 388
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 437 DEKKSFDEFLNRVDSSLADXXRHVEKTKENSEFVKDI 547
D K FDE + ++S+LAD ++++ + VKDI
Sbjct: 356 DSKPLFDE-MGHMESTLADIYKNLDGASRHKPVVKDI 391
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 311 IPVTKDSPFYENGERVXELPPPN 379
+P+ K + E GE V +PPPN
Sbjct: 641 LPIEKKLLYKETGETVISIPPPN 663
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,072
Number of Sequences: 27780
Number of extensions: 218198
Number of successful extensions: 657
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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