Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4l10
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    29   0.70 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    29   0.70 
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.92 
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    28   1.2  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 596 LKQFCTEWPNLLNSEESIEKHYPLEIISSDYCH-ASPSIRNPLARV 730
           L  F  + P L+ S+  I   +    ISSD C  AS   +NPLA+V
Sbjct: 122 LINFSEDKPRLVWSQNRISDSFLSSTISSDACFIASIETKNPLAKV 167


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 129 NVKLWRLNSTSADSALKKGEEEEEFRVLDILKKRDK 236
           NV+LWR  ++S  ++++   EE   + LD L++R K
Sbjct: 339 NVRLWRARASSR-ASIRSTREENRLKYLDSLRERYK 373


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +3

Query: 150 NSTSADSALKKGEEEEEF-----RVLDILKKRDKMQRRVVKRTDVQPDRIDRMATNQVKM 314
           N  + DS  +  EEEE+      + L+ LK++D    + +++ D      +   T+ +  
Sbjct: 101 NENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAK 160

Query: 315 FTI*RNNNFVFTNQKIILTSKTIKMYQ 395
             I  N     ++ KI+LTS TI+ +Q
Sbjct: 161 -EIDENERLKSSSGKIVLTSDTIQQWQ 186


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 87  LIKRSKSGCFNSA---CNVKLWRLNSTSADSALKKGEEEEE 200
           L+KR KSG +       N ++W     + +  + +GEEEEE
Sbjct: 165 LVKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEE 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,799
Number of Sequences: 5004
Number of extensions: 65304
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)