Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4l10
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150           36   0.045
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615...    29   3.9  
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080...    29   5.1  
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    28   6.8  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    28   6.8  
08_02_1084 - 24232968-24234779                                         28   9.0  
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    28   9.0  

>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
          Length = 383

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 437 PKTFHPSSVPLPIRQGYVPKGQAPPGK-KANAELMKIPNFLHLTPPV 574
           P  + P+ VP+P   GYVP   APPG  +A  E++K P  +H  PPV
Sbjct: 280 PPYYPPAFVPMPY-YGYVPVFYAPPGAVQAQHEVVK-PVAVHSKPPV 324


>02_03_0212 -
           16460665-16460766,16460971-16461298,16461379-16461502,
           16461576-16461825,16462185-16462265,16463030-16463114,
           16463200-16463321,16463865-16464672,16464775-16465027,
           16465998-16466796
          Length = 983

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 412 ELGECVAWSENFPPVFGAITDTSGLRTKGS 501
           E GEC+AW  +  PVF   T   G    GS
Sbjct: 244 EAGECIAWEAHRGPVFALTTSLYGDLWSGS 273


>11_04_0158 +
           14207463-14207629,14207724-14207774,14207874-14208002,
           14209342-14209447,14209491-14209601,14210042-14210098,
           14210903-14211727
          Length = 481

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 431 PGPKTFHPSSVPLP 472
           PGP  FHPSS P+P
Sbjct: 283 PGPAAFHPSSRPMP 296


>10_08_0829 -
           20871810-20872011,20873226-20873359,20873480-20877313,
           20878057-20878177,20878414-20878451,20879096-20879218,
           20879308-20879505,20880270-20880356
          Length = 1578

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/55 (23%), Positives = 31/55 (56%)
 Frame = +3

Query: 75  KMSILIKRSKSGCFNSACNVKLWRLNSTSADSALKKGEEEEEFRVLDILKKRDKM 239
           +++  +K  ++ C +    +  +R  S+  +  L+K +EE + R+L++   RDK+
Sbjct: 590 RLTSKVKYLETKCADLELKLISFRSESSELEEKLQKSQEELKDRILELSDLRDKL 644


>01_01_0128 -
           1167904-1168749,1168790-1168863,1169419-1169491,
           1171148-1171398,1171442-1171687,1172220-1172415,
           1172796-1172876,1172966-1173169,1173671-1173880,
           1173953-1174174,1174437-1174480,1174974-1175052,
           1175066-1175227,1175337-1175564,1175786-1175815,
           1175905-1176273,1176356-1176571,1177202-1177683,
           1177930-1177975
          Length = 1352

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/41 (29%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
 Frame = +3

Query: 168 SALKKGEEEEEFRVL-DI-LKKRDKMQRRVVKRTDVQPDRI 284
           S LKK  E+E  R+L D+ L+++++++R++V++  ++ + +
Sbjct: 636 SVLKKSAEDERIRLLNDVKLREQERIRRQLVEKEKIEAEEL 676


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 344 FHQSENNFN-FENDKNVSVKILFQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPP 511
           ++  +++F+   ND NV    L  +  +  P  +   P S+P P+ Q   P  Q PP
Sbjct: 24  YYGDDDDFDDLYNDVNVGDGFLHNSSSSQPPPSQQLPPPSLPPPLPQKQPPSQQLPP 80


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 422 NVWPGPKTFHPSSVPLPIRQGYVPKGQAPP 511
           +VW  P T  PS VP+   +  VP+G APP
Sbjct: 292 HVWGHP-TMDPSRVPVWPPRHLVPRGPAPP 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,678,293
Number of Sequences: 37544
Number of extensions: 391858
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)