Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4l10
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical...   110   9e-25
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     31   1.1  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81520-2|CAB04221.1|  272|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    28   6.0  
U52000-4|AAA96092.1|  107|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39B6A.39 protein.
          Length = 365

 Score =  110 bits (265), Expect = 9e-25
 Identities = 54/113 (47%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
 Frame = +2

Query: 410 QNWGNVWPGPKTFHPSSVPLPIRQGYVP--KGQAPPGKKANAELMKIPNFLHLTPPVIKS 583
           Q W +VWP  +TF  S VPLP+R G  P  + +AP  K+ N EL+KIPNFLHLTPP I+ 
Sbjct: 103 QKWCDVWPAARTFASSVVPLPVRMGTRPNVEKRAPFKKEGNLELVKIPNFLHLTPPAIQQ 162

Query: 584 QCEALKQFCTEW-PNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLARVVIL 739
            C+A+K+FCT + P LL++  +  +H P+ I  S Y H   SIR+  +RVV +
Sbjct: 163 HCQAIKKFCTPFPPELLSNPSATCQHLPISIEYSTYIHQGTSIRDIRSRVVTM 215


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +2

Query: 575 IKSQCEALKQFCTEWPNL--LNSEE---SIEKHYPLEIISSDYCHASPSIRN 715
           ++S C   + FC + PNL  +NS+    SI +HYPL ++     H+  + ++
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSIPRHYPLYLVGLFDLHSGQTCQS 547


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +2

Query: 575 IKSQCEALKQFCTEWPNL--LNSEE---SIEKHYPLEIISSDYCHASPSIRN 715
           ++S C   + FC + PNL  +NS+    SI +HYPL ++     H+  + ++
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSIPRHYPLYLVGLFDLHSGQTCQS 547


>Z81520-2|CAB04221.1|  272|Caenorhabditis elegans Hypothetical
           protein F31B9.2 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 291 MATNQVKMFTI*RNNNFVFTNQKIILTS 374
           +A N  + F++ + NN  FTNQ+++LTS
Sbjct: 41  IAVNFGQSFSLDKENNVRFTNQRLVLTS 68


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 386 NVSVKILFQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKA 523
           + ++  +F+N  N  P P  + PSS PLP    Y+      P  K+
Sbjct: 60  SATITKIFENITNS-PSPPVYDPSSHPLPASHVYIVSAYYYPNSKS 104


>U52000-4|AAA96092.1|  107|Caenorhabditis elegans Hypothetical
           protein B0410.1 protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 119 IEAPRLRTFD*NAHFLYYLKCCKHLVTKRH 30
           I+ PR+R+FD    FL    CC H   K H
Sbjct: 46  IKCPRMRSFDVGLFFLIVSSCC-HFHYKMH 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,518,573
Number of Sequences: 27780
Number of extensions: 359458
Number of successful extensions: 983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)