Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k23
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.70 
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   5.0  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   6.6  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 221 TDSKRS*KKHTTRRHPTWKYESMV 292
           TDSK+  K H T  HP+W  E  V
Sbjct: 192 TDSKQLVKYHPTEVHPSWTVEEPV 215


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 310 FRSNGSDHTFIFPGWMSSCRMFFLA 236
           F+  G D    F  W +SC M F++
Sbjct: 129 FKDYGKDEWVYFAVWCASCLMIFIS 153


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 81 CVQTFRIMSFIDFDNLYFDYNHITNN 4
          C Q        +FDNLY D N I +N
Sbjct: 17 CSQLIENDRIPEFDNLYLDMNGILHN 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,351
Number of Sequences: 5004
Number of extensions: 27501
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)