Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k23
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139...    27   4.9  
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553...    27   8.6  

>06_01_0179 -
           1388602-1389572,1390060-1390129,1390346-1390439,
           1390587-1390687,1391152-1391220,1391328-1391482,
           1392193-1392241,1392611-1392739,1392825-1393580,
           1394711-1394902
          Length = 861

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 183 IAISPMIDVSEYKQIQKEARKNIRQEDIQPGNM 281
           +   P+ID +     QK++R +IRQ+DI   N+
Sbjct: 183 VTSQPVIDAAGALHAQKKSRVDIRQDDILQHNL 215


>11_04_0057 -
           12953479-12954364,12954484-12955034,12955125-12955342,
           12957514-12957678,12960562-12960898
          Length = 718

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +1

Query: 10  CYMVIVEIQIIKIDKTHNSECLYTFHENKILKWLYFVVGVTQLLSAVLLVY 162
           C +   E QI   D+      L       +  W Y  VG  Q+++  +LVY
Sbjct: 294 CCLAFAEDQIAHWDEAQKDRAL-----RGLFSWYYVSVGFAQIVAVTILVY 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,678,419
Number of Sequences: 37544
Number of extensions: 137757
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)