Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k23
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-12|CAE17919.1|   92|Caenorhabditis elegans Hypothetical p...    36   0.017
Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    27   7.7  
AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z36753-12|CAE17919.1|   92|Caenorhabditis elegans Hypothetical
           protein T09A5.15 protein.
          Length = 92

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 183 IAISPMIDVSEYKQIQKEARKNIRQE-DIQPGNMKVWSDPFERK 311
           + + P      YK  QKE R  +R   + Q G   VW DPFERK
Sbjct: 49  VTLYPKYHHDYYKNAQKEERALLRSSREQQAGPQNVWIDPFERK 92


>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 213 EYKQIQKEARKNIRQEDIQPGNMKVWSDPFERKKPE 320
           ++ ++  + R+ +    + P N K W + F+ +KPE
Sbjct: 51  DFDELDIKRRQFVEWAPLNPLNWKNWIEDFQNRKPE 86


>AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical
           protein W03G9.7 protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 243 KNIRQEDIQPGNMKVWSDPFERKKPEHD 326
           ++IR+E  +PG ++ W+DP ERK  + +
Sbjct: 13  EDIRKE--KPGPVEKWADPVERKSRDDE 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,468,414
Number of Sequences: 27780
Number of extensions: 149265
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)