Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k23
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   2.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   2.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   2.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   2.6  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   5.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   5.9  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   5.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   5.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   5.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   7.8  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 58  HNSECLYTFHENKILKWLYFVVGVTQLLSAVLLVY 162
           HN+   Y ++ N   K LY+ +   + +   + VY
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVY 125


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 58  HNSECLYTFHENKILKWLYFVVGVTQLLSAVLLVY 162
           HN+   Y ++ N   K LY+ +   + +   + VY
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVY 125


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 58  HNSECLYTFHENKILKWLYFVVGVTQLLSAVLLVY 162
           HN+   Y ++ N   K LY+ +   + +   + VY
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVY 125


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 58  HNSECLYTFHENKILKWLYFVVGVTQLLSAVLLVY 162
           HN+   Y ++ N   K LY+ +   + +   + VY
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPIPVPVY 125


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 341 GEFVSIMLRFLSFEWIGP 288
           G FVSI  +   F +IGP
Sbjct: 363 GPFVSIQEQIPRFRYIGP 380


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 341 GEFVSIMLRFLSFEWIGP 288
           G FVSI  +   F +IGP
Sbjct: 363 GPFVSIQEQIPRFRYIGP 380


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 341 GEFVSIMLRFLSFEWIGP 288
           G FVSI  +   F +IGP
Sbjct: 363 GPFVSIQEQIPRFRYIGP 380


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 341 GEFVSIMLRFLSFEWIGP 288
           G FVSI  +   F +IGP
Sbjct: 352 GPFVSIQEQIPRFRYIGP 369


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -2

Query: 69  FRIMSFIDFDNLYFDYNHITNN 4
           ++  ++ +++N Y +YN+  NN
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNN 343


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 268 WMSSCRMFFLAS 233
           WMSSC +F   S
Sbjct: 279 WMSSCSVFVFLS 290


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 102 QNFIFMKCVQTFRIMSFI 49
           ++F+FMKC+     ++FI
Sbjct: 124 KSFMFMKCMYEVNPIAFI 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,002
Number of Sequences: 438
Number of extensions: 2121
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)