Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k17
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 91 1e-19
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 91 1e-19
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 48 1e-06
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 35 0.013
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 32 0.095
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 2.0
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.2
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.2
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.2
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 25 8.2
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 8.2
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 91.1 bits (216), Expect = 1e-19
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Frame = +1
Query: 334 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL---NGTLSDWSYFA 504
MG L++P K++ SG L +GV+ MQGWR+ MEDAH A L N + S+F
Sbjct: 1 MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60
Query: 505 VFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEK 684
VFDGH G RV+ +C ++L + I F + + EA+++GFL D + + ++ ++
Sbjct: 61 VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQDRDMQ--EDP 118
Query: 685 SGSTAVCAFV 714
SG TA A +
Sbjct: 119 SGCTATTALI 128
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 91.1 bits (216), Expect = 1e-19
Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Frame = +1
Query: 334 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL--NGTLSDWSYFAV 507
MG L++P T+K++ +G + YG++SMQGWR+ MEDAH A L++ + +FAV
Sbjct: 1 MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDPVDFFAV 60
Query: 508 FDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKS 687
+DGH G +V+ C NL + + + +F++ D A+++ FL+ DK + + + + S
Sbjct: 61 YDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHT--DPS 118
Query: 688 GSTA 699
G TA
Sbjct: 119 GCTA 122
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 48.0 bits (109), Expect = 1e-06
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = +1
Query: 421 QGWRVEMEDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQTEEFRRED 600
Q WR MED H G D + AV+DGHAG + S +C +NL + +L E+ R E
Sbjct: 80 QRWRRSMEDTHICLYDFGGNQDD-GFVAVYDGHAGIQASDYCQKNLHKVLL--EKVRNEP 136
Query: 601 ---IAEAIRTGFLDLDKKMSELPELSNGKEKSGSTAVCAF 711
+ + + F++++ K+++ + + G TA AF
Sbjct: 137 DRLVTDLMDETFVEVNSKIAK----ATHNDICGCTAAVAF 172
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 34.7 bits (76), Expect = 0.013
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Frame = +1
Query: 379 SGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWS-YFAVFDGHAGA----RVSAH 543
S + N LRYGV + + A +L +N L S + V D A RV
Sbjct: 988 SPQPNILRYGVCGYLSRSIPVISA--CELVVNNFLHPQSSLYCVLDSDISAGKNNRVLKF 1045
Query: 544 CAENLLECI---LQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSG 690
+NL C+ + + E I A+R GFL L+KK+ + K G
Sbjct: 1046 VYDNLASCLAHEINAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEG 1097
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 31.9 bits (69), Expect = 0.095
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 442 EDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECIL-QTEEFRREDIAEAIR 618
ED H + N +W ++ +FDGH+G S ++L+ ++ + ++ +
Sbjct: 98 EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLVPAVVRELQKCTASYYHQNAC 157
Query: 619 TGFLDLDKKMSE 654
L LDK +SE
Sbjct: 158 PSSLALDKSISE 169
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 355 PETKKYNESGEGNGLRYGVASMQGWRVEMEDAH-HAQL--TLNGTLSDWSYFAVFD 513
PE + YN +GE YG AS + + H +Q ++ ++ DW Y +F+
Sbjct: 230 PEIQDYNFAGENGMGVYGAASAYTYSDAYQALHTRSQYLREMSNSIEDWDYELMFE 285
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 625 FLDLDKKMSELPELSNGKEKSGSTAVCAF 711
FLDL +P LSN ST +C F
Sbjct: 184 FLDLPAPWEAIPHLSNHVNHDKSTRICCF 212
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 523 GARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSGSTAV 702
GA CA N LEC ++ + D + + F+DL K+ L + E+ ST V
Sbjct: 52 GANPCKACASNNLECTYPVKDEKEMDYS---KDYFIDLSKRYKCLEYI---VERLCSTKV 105
Query: 703 CAFVSP 720
+ +P
Sbjct: 106 STYTTP 111
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 634 NPGNQYGL---LQLCLHAETPPSAEYIQEDFLHSVRR 533
N G++ G+ L+ +++ TP E +DF+++VRR
Sbjct: 1957 NSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRR 1993
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 454 HAQLTLNGTLSDWSYFAVFD 513
H +T NG L+ WS +FD
Sbjct: 357 HGYVTYNGWLAQWSMITLFD 376
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +1
Query: 583 EFRREDIAEAIRTGFLDLDKKMSELPELS 669
+F + D+A+ + T F+ +D +++LP +S
Sbjct: 55 QFAQRDLAKDLVTKFMQIDTLINQLPGIS 83
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 541 HCAENLLECILQTEEFRREDIAEAIRTGFLDLDKK 645
H E L++CIL+ EE+ + I FLD+ K+
Sbjct: 74 HSEEKLVDCILKDEEYDKR--YPGIHIVFLDMVKE 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,261
Number of Sequences: 5004
Number of extensions: 49175
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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