Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k17
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical pr... 122 3e-28
U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical p... 97 1e-20
Z46343-1|CAA86456.2| 356|Caenorhabditis elegans Hypothetical pr... 89 3e-18
Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical pr... 87 9e-18
AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical... 67 1e-11
U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical p... 50 2e-06
Z81525-9|CAB04260.1| 242|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AL031264-1|CAA20326.1| 242|Caenorhabditis elegans Hypothetical ... 42 3e-04
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 38 0.005
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 38 0.005
Z82260-2|CAB05130.1| 344|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC006834-5|AAF40007.1| 451|Caenorhabditis elegans Hypothetical ... 29 4.4
AC084197-33|AAN63423.2| 352|Caenorhabditis elegans Him-three pa... 28 7.7
>Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical
protein F25D1.1a protein.
Length = 468
Score = 122 bits (293), Expect = 3e-28
Identities = 67/149 (44%), Positives = 93/149 (62%), Gaps = 19/149 (12%)
Frame = +1
Query: 331 SMGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQ--LTLNGTLSDWSYFA 504
+MGAFL+KP+T K N GEGNG+RYG++SMQGWR+ MED+H A+ ++ + DWS+FA
Sbjct: 83 TMGAFLDKPKTDKTNVHGEGNGIRYGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFA 142
Query: 505 VFDGHAGARVSAHCAENLLECILQTEEFRR-----ED------------IAEAIRTGFLD 633
VFDGHAG ++ + LLE ++ +EEFR E+ + + I+ GFL
Sbjct: 143 VFDGHAGHHIANRASSQLLEHLISSEEFREMTKTLEENNGVLTDSTLKLLEKGIKKGFLS 202
Query: 634 LDKKMSELPELSNGKEKSGSTAVCAFVSP 720
D E+ + SN KSG TAVCA V+P
Sbjct: 203 FD----EISKTSNDISKSGCTAVCAIVTP 227
>U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical
protein F42G9.1a protein.
Length = 491
Score = 97.1 bits (231), Expect = 1e-20
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 8/130 (6%)
Frame = +1
Query: 334 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWSYFAVFD 513
MGA+LNKP +K E G GNGL Y +MQGWRV EDAH+ + L+ +DW F V+D
Sbjct: 1 MGAYLNKPIIEKEKEEGSGNGLSYACTTMQGWRVNQEDAHNCVVDLH---TDWHMFGVYD 57
Query: 514 GHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLD------KKMSELPELSN- 672
GH G VS + L + + + + + +D+AE ++ F+D D + M EL ++ +
Sbjct: 58 GHGGTEVSKFTSAKLPDFLKERKFWEADDVAECLQKAFVDFDDFIRAEESMKELKDIGDE 117
Query: 673 GK-EKSGSTA 699
GK +K+G A
Sbjct: 118 GKPKKAGGEA 127
>Z46343-1|CAA86456.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.1 protein.
Length = 356
Score = 89.0 bits (211), Expect = 3e-18
Identities = 50/127 (39%), Positives = 75/127 (59%)
Frame = +1
Query: 334 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWSYFAVFD 513
MG L++P TKK + S G + MQGWRV+MEDAH L+L ++FAV+D
Sbjct: 1 MGQTLSEPVTKKESASCANENYLVGSSCMQGWRVDMEDAHTHLLSLPDD-PKCAFFAVYD 59
Query: 514 GHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSGS 693
GH G++VS + NL + ++ +EF ++ EAI GFL+LD++M E + + SG+
Sbjct: 60 GHGGSKVSQYSGINLHKKVVAQKEFSEGNMKEAIEKGFLELDQQMRVDEETKD--DVSGT 117
Query: 694 TAVCAFV 714
TAV +
Sbjct: 118 TAVVVLI 124
>Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical
protein F25D1.1b protein.
Length = 367
Score = 87.4 bits (207), Expect = 9e-18
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 19/125 (15%)
Frame = +1
Query: 403 YGVASMQGWRVEMEDAHHAQ--LTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQ 576
YG++SMQGWR+ MED+H A+ ++ + DWS+FAVFDGHAG ++ + LLE ++
Sbjct: 6 YGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHLIS 65
Query: 577 TEEFRR-----ED------------IAEAIRTGFLDLDKKMSELPELSNGKEKSGSTAVC 705
+EEFR E+ + + I+ GFL D E+ + SN KSG TAVC
Sbjct: 66 SEEFREMTKTLEENNGVLTDSTLKLLEKGIKKGFLSFD----EISKTSNDISKSGCTAVC 121
Query: 706 AFVSP 720
A V+P
Sbjct: 122 AIVTP 126
>AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical
protein Y54F10BM.1 protein.
Length = 766
Score = 67.3 bits (157), Expect = 1e-11
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Frame = +1
Query: 388 GNGLRYGVASMQGWRVEMED--AHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLL 561
G +R VA+ QG R MED H + NG L DW++ VFDGH G S + +LL
Sbjct: 16 GENMRITVAASQGGRRYMEDRCVIHTERINNGLL-DWTFVGVFDGHGGEHASEYVRRHLL 74
Query: 562 ECILQTEEFRR---EDIAEAIRTGFLDLDKKM----SELPELSNG-KEKSGSTAVCAFV 714
I + ++F EDI EAIR GFL ++M E P ++G +G+T C F+
Sbjct: 75 MNITKNQKFESNSDEDILEAIRQGFLMTHEQMRHVYDEWPYTASGYPSTAGTTVSCVFI 133
>U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical
protein F42G9.1b protein.
Length = 469
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Frame = +1
Query: 442 EDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRT 621
+DAH+ + L+ +DW F V+DGH G VS + L + + + + + +D+AE ++
Sbjct: 15 QDAHNCVVDLH---TDWHMFGVYDGHGGTEVSKFTSAKLPDFLKERKFWEADDVAECLQK 71
Query: 622 GFLDLD------KKMSELPELSN-GK-EKSGSTA 699
F+D D + M EL ++ + GK +K+G A
Sbjct: 72 AFVDFDDFIRAEESMKELKDIGDEGKPKKAGGEA 105
>Z81525-9|CAB04260.1| 242|Caenorhabditis elegans Hypothetical
protein F33A8.6 protein.
Length = 242
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 349 NKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLN-GT----LSDWSYFAVFD 513
N E+KK ES +G R +M+D H + GT LS S+FA+FD
Sbjct: 16 NSDESKKPKESRNLYCTLAAYGCRKGERADMQDTHIMLPKFDLGTEKSFLSRASFFAIFD 75
Query: 514 GHAGARVSAHCAENL 558
GHAG R + HC +
Sbjct: 76 GHAGPRAAEHCQSQM 90
>AL031264-1|CAA20326.1| 242|Caenorhabditis elegans Hypothetical
protein F33A8.6 protein.
Length = 242
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 349 NKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTLN-GT----LSDWSYFAVFD 513
N E+KK ES +G R +M+D H + GT LS S+FA+FD
Sbjct: 16 NSDESKKPKESRNLYCTLAAYGCRKGERADMQDTHIMLPKFDLGTEKSFLSRASFFAIFD 75
Query: 514 GHAGARVSAHCAENL 558
GHAG R + HC +
Sbjct: 76 GHAGPRAAEHCQSQM 90
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 38.3 bits (85), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +1
Query: 493 SYFAVFDGHAGARVSAHCAENLLECILQTEEFR--REDIAEAIRTGFLDLDKKMSELPEL 666
S AVFDGH G S + A +L E L+ + R + + + +R LD++M+ +
Sbjct: 196 SVLAVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSDSLEDQLRKSLELLDERMT----V 251
Query: 667 SNGKE--KSGSTAVCAFV 714
+ KE K GSTAVC +
Sbjct: 252 RSVKECWKGGSTAVCCAI 269
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 38.3 bits (85), Expect = 0.005
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +1
Query: 493 SYFAVFDGHAGARVSAHCAENLLECILQTEEFR--REDIAEAIRTGFLDLDKKMSELPEL 666
S AVFDGH G S + A +L E L+ + R + + + +R LD++M+ +
Sbjct: 196 SVLAVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSDSLEDQLRKSLELLDERMT----V 251
Query: 667 SNGKE--KSGSTAVCAFV 714
+ KE K GSTAVC +
Sbjct: 252 RSVKECWKGGSTAVCCAI 269
>Z82260-2|CAB05130.1| 344|Caenorhabditis elegans Hypothetical
protein C32H11.3 protein.
Length = 344
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 427 WRVEMEDAHHAQLTLNGTLSD-WSYFAVFDGHAGARVSAH 543
W V + + ++A+L +NG + D +S+F D S+H
Sbjct: 60 WIVTIPEGYYARLIINGKMGDPYSHFLTIDSAGNLITSSH 99
>AC006834-5|AAF40007.1| 451|Caenorhabditis elegans Hypothetical
protein ZK973.3 protein.
Length = 451
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 499 FAVFDGHAGARVSAHCAENL 558
F VFDGH G + S H + NL
Sbjct: 70 FGVFDGHGGQQCSRHISTNL 89
>AC084197-33|AAN63423.2| 352|Caenorhabditis elegans Him-three
paralog protein 2 protein.
Length = 352
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 412 ASMQGWRVEMEDAHHAQLTLNGTLSDWSYFAVFD 513
A MQ W M D++ A+LTL G L S F+
Sbjct: 242 AHMQCWSKSMSDSYAAELTLKGHLDKVSDMYAFN 275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,736,432
Number of Sequences: 27780
Number of extensions: 278881
Number of successful extensions: 794
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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