Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k16
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 34 0.047
01_01_0082 + 625198-625719 33 0.11
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.14
02_04_0382 - 22501041-22501279,22501717-22501810 30 0.76
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 30 1.0
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 1.0
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 1.3
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 29 1.7
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 28 3.1
08_02_1289 - 25923916-25924586,25925148-25926630 27 5.3
04_03_0904 + 20717005-20718087 27 5.3
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 5.3
09_02_0417 - 8915604-8916779,8916863-8917270 27 7.1
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 9.3
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 34.3 bits (75), Expect = 0.047
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 170 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGARG 328
Y P + P V PP Y P +G P N + Y +PP GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>01_01_0082 + 625198-625719
Length = 173
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 155 YGGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARGG 331
YGG GY P + NP YNP +G+ N Y+ PP G Y + F P A G
Sbjct: 98 YGGGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAAG 152
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.14
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 170 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 319
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 30.3 bits (65), Expect = 0.76
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 215 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARGG 331
D P+ + Y+P + YY DPP Y+ P P P GG
Sbjct: 55 DPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 29.9 bits (64), Expect = 1.0
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 149 KRYGGNGYEP--IDNRPYIVNPPKDYN-PNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPG 319
K YGG+ YE I RP PP Y+ P+ G Y PPQG P P+
Sbjct: 175 KEYGGDKYENGVITPRP----PPVHYSKPSRTDRNRNYRGNYQNGPPQGNYQNSPPPYGS 230
Query: 320 ARGGK 334
+ G+
Sbjct: 231 QQDGR 235
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 188 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 304
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 161 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 313
G Y+P R PP+ P Y P G Y PQG+PY P P+
Sbjct: 247 GETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 176 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 316
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/58 (25%), Positives = 22/58 (37%)
Frame = +2
Query: 131 SVRDAKKRYGGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 304
++RD + P D P + P +++ G G DPP GRP P
Sbjct: 461 TLRDGSSSNNPTPFAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDP 518
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 89 ANAQDPVKVVENADSVRDAKKRYGGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYY 268
A AQ P + + K + G+G +N+ Y N PK +P NG Y
Sbjct: 90 AQAQQPSPPPPQSQAPNRTHK-FDGHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPY 148
Query: 269 VDPPQGRPYFKPT-PFP 316
P G+P++ P P P
Sbjct: 149 HQHP-GQPFYYPVIPSP 164
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 442 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 293
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 203 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 316
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 256 RCILRGPSPR-PTLLQAYPFPWCSRW 330
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 191 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 310
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 229 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 348
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,421
Number of Sequences: 37544
Number of extensions: 277915
Number of successful extensions: 738
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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