Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k13
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 285 2e-77
Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical pr... 285 2e-77
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 35 0.070
Z81576-1|CAB04643.2| 312|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF077542-12|AAC26293.1| 169|Caenorhabditis elegans Hypothetical... 31 0.86
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 285 bits (699), Expect = 2e-77
Identities = 131/206 (63%), Positives = 162/206 (78%), Gaps = 6/206 (2%)
Frame = +2
Query: 143 LTRNYGTA-----KRVVAAKPVVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPH 307
L RN TA +++ PVV++DGDEMTRIIW +IK +LI PY+ +D Y+DLGL +
Sbjct: 12 LARNVATAATQERQKIKVDNPVVDLDGDEMTRIIWKEIKNKLILPYLDLDIKYYDLGLEY 71
Query: 308 RDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 487
RD T+DQVTID+AHAIL+H+VGIKCATITPDE R++EF LKKMWLSPNGTIRNILGGTVF
Sbjct: 72 RDETNDQVTIDAAHAILEHSVGIKCATITPDEARIKEFNLKKMWLSPNGTIRNILGGTVF 131
Query: 488 REPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGTTERRVL 667
REPILC++IPR+VPGWT+PI IGRHA GDQYK D V+P ++L+ DG+ + +
Sbjct: 132 REPILCKNIPRLVPGWTQPITIGRHAFGDQYKCTDLVIPSGSTLQLLVNKPDGSKDVHNV 191
Query: 668 YDF-KTPGVAMGMYNTDESIRSFAHS 742
YDF K+ GV + MYNTDESI+ FAHS
Sbjct: 192 YDFKKSGGVGLAMYNTDESIKGFAHS 217
>Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical
protein F59B8.2 protein.
Length = 412
Score = 285 bits (699), Expect = 2e-77
Identities = 129/194 (66%), Positives = 159/194 (81%), Gaps = 1/194 (0%)
Frame = +2
Query: 164 AKRVVAAKPVVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDS 343
A + + +VEM GDEMTRIIW IKE+LI PYV ++ +FDLG+ HRDATDDQVTID+
Sbjct: 2 AAQKIQGGDIVEMQGDEMTRIIWDLIKEKLILPYVDLNVHFFDLGIEHRDATDDQVTIDA 61
Query: 344 AHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRV 523
A+A LK+NV +KCATITPDE RVEEFKLKKMW SPNGTIRNILGGTVFREPI+ +++PR+
Sbjct: 62 ANATLKYNVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIIVKNVPRL 121
Query: 524 VPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGT-TERRVLYDFKTPGVAMG 700
V W+KPI+IGRHAH DQYKA DFVVP GK+E+ + + DGT T + ++DFK PGV++
Sbjct: 122 VNTWSKPIIIGRHAHADQYKATDFVVPGAGKLEIKFVSADGTQTIQETVFDFKGPGVSLS 181
Query: 701 MYNTDESIRSFAHS 742
MYNTD+SIR FAH+
Sbjct: 182 MYNTDDSIRDFAHA 195
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
protein F40H6.5 protein.
Length = 1288
Score = 34.7 bits (76), Expect = 0.070
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 53 HEQW*IHEQYRNMANTSTTKILKCVNQFASLTRNYGTA-KRVVAAKPVVEM-DGDEMTRI 226
++QW I N NT+ + KC++ F +NYG KR+V ++E+ D +T
Sbjct: 730 YQQWTIDTVQMNYQNTNLKYLPKCISIF---QKNYGDLNKRMVNFARIMEVGDNITITGH 786
Query: 227 IWAKIKERLIFPYVKVDCLY 286
IW E YV +D Y
Sbjct: 787 IWQNASESTFNLYVGMDPKY 806
>Z81576-1|CAB04643.2| 312|Caenorhabditis elegans Hypothetical
protein R10E8.1 protein.
Length = 312
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 197 EMDGDEMTRII-WAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVG 373
EMD D +T++ W +IK LI ++ L L LP T +TI + + KH +G
Sbjct: 170 EMDCDGLTKLPHWKRIKSLLIEGFIVSAPLEHFLHLPEVTITMQSITIFNLKLLKKHFLG 229
Query: 374 IK 379
+K
Sbjct: 230 LK 231
>AF077542-12|AAC26293.1| 169|Caenorhabditis elegans Hypothetical
protein Y57G7A.9 protein.
Length = 169
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 320 DDQVTIDSAHAILKHNVGIKCATITPDEQRVE 415
+DQ + H I K N GI+CA + P+ Q E
Sbjct: 29 NDQYFQEVIHRICKRNEGIRCAMLAPNAQHAE 60
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 594 LLYRNPERLNSFTLHKMVRLRGV-YYMILKLQALLW 698
L Y PE + SF +++ ++ YYM+ +++AL W
Sbjct: 3113 LKYEIPEFVVSFYMYERAKMSSADYYMVDRMEALYW 3148
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 594 LLYRNPERLNSFTLHKMVRLRGV-YYMILKLQALLW 698
L Y PE + SF +++ ++ YYM+ +++AL W
Sbjct: 3113 LKYEIPEFVVSFYMYERAKMSSADYYMVDRMEALYW 3148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,580,454
Number of Sequences: 27780
Number of extensions: 371126
Number of successful extensions: 823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -