Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k10
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical pr...   298   2e-81
AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH oxidored...   298   2e-81
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    32   0.38 
U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical
           protein T20H4.5 protein.
          Length = 212

 Score =  298 bits (732), Expect = 2e-81
 Identities = 137/181 (75%), Positives = 150/181 (82%), Gaps = 1/181 (0%)
 Frame = +2

Query: 194 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKG 370
           Q    YK+V    E D +     +     +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32  QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91

Query: 371 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 550
           PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE R DGSRRTTRYDIDMTK
Sbjct: 92  PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151

Query: 551 CIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLSNGDKWESEIASNIRADHLY 730
           CIYCG CQEACPVDAIVEGPNFE+STETHEELLYNKEKLL NGD+WE E+ASN++A++LY
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLY 211

Query: 731 R 733
           R
Sbjct: 212 R 212


>AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH
           oxidoreductase complex I 23.8kDa subunit protein.
          Length = 212

 Score =  298 bits (732), Expect = 2e-81
 Identities = 137/181 (75%), Positives = 150/181 (82%), Gaps = 1/181 (0%)
 Frame = +2

Query: 194 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKG 370
           Q    YK+V    E D +     +     +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32  QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91

Query: 371 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERKDGSRRTTRYDIDMTK 550
           PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE R DGSRRTTRYDIDMTK
Sbjct: 92  PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151

Query: 551 CIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLSNGDKWESEIASNIRADHLY 730
           CIYCG CQEACPVDAIVEGPNFE+STETHEELLYNKEKLL NGD+WE E+ASN++A++LY
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLY 211

Query: 731 R 733
           R
Sbjct: 212 R 212


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
 Frame = +2

Query: 365 KGPLSPRFRGEHALRRYPSGEERCIA--CKL-CEAICPA-----QAITIEAEERKDGSRR 520
           KGPL      +  LR     ++RC    C L C+  CP      Q I +EA         
Sbjct: 4   KGPLIKNNETDVPLRIAIVEKDRCKPKNCGLACKRACPVNRQGKQCIVVEAT-------- 55

Query: 521 TTRYDIDMTKCIYCGFCQEACPVDAI 598
           +T   I    CI CG C + CP DAI
Sbjct: 56  STISQISEILCIGCGICVKKCPYDAI 81


>U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical
           protein F33G12.2 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 CPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCG 565
           CP   +   A + K G+ R  RY++D   C+ CG
Sbjct: 4   CPT--VRARAIDCKQGAVRAVRYNVDGNYCVTCG 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,176,393
Number of Sequences: 27780
Number of extensions: 378714
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)