Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k10
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
 Frame = +3

Query: 378 RLGSEVNMLYVATLQEKKGALLVSCAKPFVQHRLSRLKQKSVRTVRGEPLDTILT*QSVS 557
           RL  E N L   TLQE   A      K + ++++  L + +   V  +  D ++   S +
Sbjct: 381 RLMDETNQL---TLQETADAFKDLQDKYYEEYKMYELGELASSFVGPKVKDCLI---SWN 434

Query: 558 IVASVKKPVRLMQSWKVRISS----FQQRHMRNFYTIRRNFCRTAINGRVR 698
            +   K+P++L + WK  + S     Q R M  +  +  N    +I G ++
Sbjct: 435 PLMQPKQPIKLFEQWKSILESGTTTLQTRTMHPYDHLVWNSWMPSIRGAIQ 485


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 452 CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFC 571
           CE +     IT +  +     +RT   DI +TKC   GFC
Sbjct: 36  CETLQSEVHITKDEYDEIGRLKRTCSGDISVTKCE--GFC 73


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 452 CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFC 571
           CE +     IT +  +     +RT   DI +TKC   GFC
Sbjct: 36  CETLQSEVHITKDEYDEIGRLKRTCSGDISVTKCE--GFC 73


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 562 TIDTLCHVNIVSSG 521
           T DT+C +NIV  G
Sbjct: 502 TYDTICQLNIVHYG 515


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 308 AVTLAHIFKEPATINYPFEKGP 373
           A  L  +FKE  T N  FE+ P
Sbjct: 99  ADALPKLFKEWGTTNLTFEEDP 120


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 540 SISYRVVRLEPSLRSSASIVIAC 472
           +++ R+  +  ++  SAS+ IAC
Sbjct: 874 NVALRITSMSVTISLSASVTIAC 896


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,803
Number of Sequences: 438
Number of extensions: 4603
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)