Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k08
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    95   1e-20
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    37   0.003
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   1.9  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   3.4  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   7.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   7.8  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 47/108 (43%), Positives = 65/108 (60%)
 Frame = +2

Query: 254 YDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRP 433
           Y+   +   + + +LIDVREPDE K  G I  S N+P+G I   + ++SD+EF+KTY   
Sbjct: 64  YNLSKRPTGDKSTVLIDVREPDEFKQ-GAIETSYNLPVGKIEEAM-KLSDEEFSKTYGFS 121

Query: 434 KPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEWASKGK 577
           KP     ++ YC +GRRS  A +    LG+KN  NY GSW EW+ K K
Sbjct: 122 KPVFEDNVVVYCRSGRRSTTASDILTKLGYKNIGNYTGSWLEWSDKIK 169


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
 Frame = +2

Query: 245 VADYDEVVKAISNNN---ILLIDVREPDEVKDH----------GHIPNSINIPL--GTIS 379
           VA +D++VK I + +   + ++D R  +    +          GHIP SINIP    T +
Sbjct: 162 VASFDDIVKVIESPDAAGVHIVDARAHERFLGNVPESRPGLASGHIPTSINIPFTETTAA 221

Query: 380 TVLGEMSDKEFNKTY-KRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWT 556
            +     +++  K +      +++  +I  C +G  ++    +    GFK+ + Y  SW+
Sbjct: 222 GITAPKPEEDLEKVFSSHGLTDKSVPIITSCGSGVTASVLFAALKECGFKDVRVYDESWS 281

Query: 557 EWASK 571
            +  +
Sbjct: 282 GYGKR 286


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 533 KNYQGSWTEWASK 571
           KN QGSW EW SK
Sbjct: 575 KNMQGSWHEWESK 587


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +2

Query: 143 NYARKQLSSNEYKAIPQLNALSLRLYSES----KVETKVADYDEVVKAISNNNILLIDVR 310
           N  + +  +NE KA  Q+  L ++ YS+S    K   ++   DE ++A +  ++L +  +
Sbjct: 598 NDLQNKSQNNERKASSQVKELEVKNYSKSTDLLKKTLRIPRNDEPLEAANQFDLLKVSPQ 657

Query: 311 EPDEV 325
           +  EV
Sbjct: 658 QKSEV 662


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 13  SLLQFIHFIKRNCITTRHVSLWTSHNTVNNTKVS 114
           SL  F+ +++ +C+ T  VSL  S N  N+  ++
Sbjct: 332 SLSNFLLYLENSCVITYDVSLDCSFNEYNDPLIT 365


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 344 PNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMAGRRSAKAQESAIN 514
           PNS  +   TI++   E+   E    +   K     E+  +C  G   + ++E AIN
Sbjct: 400 PNSKEV---TITSAPDEVEQDEAKSFHSSAKFQTEKEITDFCQKGVEESASEEEAIN 453


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 326  KDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFY 466
            K +GHI    +I +  +S+++GE  ++ +    K    ++  E+I Y
Sbjct: 1406 KAYGHIERHRDILVNDLSSIIGESYNRAYGIMVKSQMLSELEEIIDY 1452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,455
Number of Sequences: 5004
Number of extensions: 44423
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)