Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k08
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1058 - 25735902-25736000,25736085-25736152,25736575-257366... 35 0.070
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 34 0.12
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568... 31 0.65
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 30 2.0
02_01_0019 + 124871-124893,125030-125128,125379-125456,125850-12... 30 2.0
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 29 3.5
03_06_0772 - 36162537-36162745,36163131-36163171,36163316-361636... 29 3.5
05_03_0510 + 14864430-14864792,14865234-14865485,14865573-148656... 29 4.6
01_05_0012 + 17147764-17148141,17148316-17148465,17149360-171497... 29 4.6
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 28 8.0
>12_02_1058 -
25735902-25736000,25736085-25736152,25736575-25736638,
25736838-25736919,25737503-25737561,25737664-25737723,
25737884-25738046,25738236-25738360,25738827-25738859,
25739098-25739160,25739364-25739423,25739972-25740196,
25740272-25740433
Length = 420
Score = 34.7 bits (76), Expect = 0.070
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 305 VREPDEVKDHGHIPNSINIPLGTISTVLGEM-SDKEFNKTYKRPKPNQNTELIFYCMAGR 481
V EP + GH+P S +P + ++ +E K +++ + + L+ C G
Sbjct: 322 VPEPRKGIRSGHVPGSKCVPFPQLLDSSQKLLPPEELRKRFEQEGISLDQPLVSSCGTGV 381
Query: 482 RSAKAQESAINLGFKNTKNYQGSWTEWAS 568
+ LG + Y GSWTEW +
Sbjct: 382 TACILALGLHRLGKTDVPVYDGSWTEWGA 410
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +2
Query: 311 EPDEVKDHGHIPNSINIP-LGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMAGRRS 487
EP E GHIP + +P L + E K +++ + + ++ C +G +
Sbjct: 568 EPREGVRSGHIPGTKCVPFLEMFDDAPMLLPADEIRKKFEQAGISLDRPIVVTCGSGVTA 627
Query: 488 AKAQESAINLGFKNTKNYQGSWTEW 562
+G ++ Y GSWTEW
Sbjct: 628 CILALGLYRIGKQDIPVYDGSWTEW 652
>07_03_1741 +
29156076-29156316,29156554-29156676,29156784-29156875,
29157577-29157677,29157752-29157862,29158254-29158362,
29158589-29158639,29158758-29158838
Length = 302
Score = 31.5 bits (68), Expect = 0.65
Identities = 29/92 (31%), Positives = 42/92 (45%)
Frame = +2
Query: 296 LIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMA 475
LIDVREPDEV D + +PL T G + EF+ P ++T ++ C
Sbjct: 214 LIDVREPDEV-DKASLEGFKVLPLRQFGT-WGPVMTDEFD-------PQKDTYVL--CHH 262
Query: 476 GRRSAKAQESAINLGFKNTKNYQGSWTEWASK 571
G RS + + + GF+ N G +A K
Sbjct: 263 GMRSMQVAKWLQSQGFRKVYNVAGGIHAYAVK 294
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +2
Query: 227 SKVETKVADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDK 406
+++ T + YDE ++ N L +D+ D +HG+ I +P T + G++S
Sbjct: 435 ARLLTGCSSYDEFLELSQRGNNLAVDLTVGDIYGEHGY--PKIGLPASTTAASFGKVSSS 492
Query: 407 EFNKTYK 427
++ YK
Sbjct: 493 RLSE-YK 498
>02_01_0019 +
124871-124893,125030-125128,125379-125456,125850-125920,
126816-126940
Length = 131
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 221 SESKVETKVADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIP 364
SES V D I++ +DVR +E+ + GH+ NS+N+P
Sbjct: 12 SESPVPVVTVDVAAASDLITSAGHRYVDVRTEEEM-NKGHLHNSLNVP 58
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 29.1 bits (62), Expect = 3.5
Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 4/158 (2%)
Frame = +2
Query: 41 NVIVLLLVMFRCGRRITQLIIRKSRTTSAGYLKLNYARKQLSSNEYKAIPQLNALSLRLY 220
N +++ V+ R G I ++ RT Y L +L N I Q + +
Sbjct: 898 NSVLMFNVLSRKGADIASKASKRKRT----YDYLVDELDKLEKNIDLMIQQEDQTQFSQH 953
Query: 221 SESKVETKVADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNS----INIPLGTISTVL 388
+S +E A+ E K + +I +PD G P + + + +
Sbjct: 954 QDSGIEIANAEQQEQEKDVQEEHI-----EDPDTANTKGRKPKRYRRIVEKIIESSKKKI 1008
Query: 389 GEMSDKEFNKTYKRPKPNQNTELIFYCMAGRRSAKAQE 502
E D E N+ RPK N N E A + KA E
Sbjct: 1009 EEQEDAEENQNKARPKRNNNEEKQTANSATKGKRKATE 1046
>03_06_0772 -
36162537-36162745,36163131-36163171,36163316-36163600,
36163710-36163813,36163924-36164021,36165039-36165213,
36166429-36166578,36167113-36167193,36167246-36167299,
36167422-36167679
Length = 484
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Frame = +2
Query: 278 SNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPK---PNQN 448
S +LL+DVR D D GH + + + +S+ E P +N
Sbjct: 228 SGRRLLLLDVRN-DYEWDIGHFQGAQRPNVDCFRSTSFGLSESEQEMDSSDPLNGIDKEN 286
Query: 449 TELIFYCMAGRRSAKAQESAINLGFKNTKNYQG 547
T+++ YC G R GF+N +G
Sbjct: 287 TDILMYCTGGIRCDVYSTILRKKGFRNLYTLKG 319
>05_03_0510 +
14864430-14864792,14865234-14865485,14865573-14865671,
14865789-14866082,14866630-14867010
Length = 462
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 434 KPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQG 547
KP + + YC G R KA ++ GFK + +G
Sbjct: 305 KPKELPRVAMYCTGGIRCEKASSFLLSKGFKEVYHLEG 342
>01_05_0012 +
17147764-17148141,17148316-17148465,17149360-17149729,
17149898-17150015,17150121-17150226,17150326-17150418,
17150498-17150593,17151169-17151891,17152012-17152160,
17153434-17153520,17153541-17153625
Length = 784
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 143 NYARKQLSSNEYKAIPQLNALSLRLYSESKVETKVADYDEV--VKAISNNNILLIDVREP 316
+Y+ QL + +P LNA R YS+ + + D+ ++ ++ N + +D
Sbjct: 248 HYSATQLDVESWPDLPSLNATLDRNYSDDNIASTYLDFSSAPSLEKVTGNTTVQLDGETE 307
Query: 317 DEVKDHGHIPNS 352
DH NS
Sbjct: 308 VFGNDHEEKSNS 319
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 191 QLN-ALSLRLYSESKVETKVADYDEVVKAISNNNI 292
QLN A+S ++ E+ VE ++ Y+E+ K I N+NI
Sbjct: 3462 QLNQAISGQVSPEAVVELRLQAYNEITKNIVNDNI 3496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,992
Number of Sequences: 37544
Number of extensions: 221179
Number of successful extensions: 440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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