Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k08
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    42   3e-04
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    42   3e-04
U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
 Frame = +2

Query: 236 ETKVADYDEVVKAISNNNILLIDVREPDEVKD------HGHIPNSINIPLGTI-STVLGE 394
           ++ +  YD+V+     +N  ++D +  DE         +GHI  + NIP+  +    +G+
Sbjct: 289 DSVIITYDDVLLNSEIDNFDVVDAQTKDEFLGTAQGALYGHIKGARNIPVDAVYDWAVGQ 348

Query: 395 MSDKEFNK-TYKRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEW 562
             D +  K  +     +    +I YC    RSA    +    G+ N K Y G W EW
Sbjct: 349 WKDADHLKGLFNNNALSLRKPVIIYCSTSLRSAMVWWALTRSGY-NGKIYFGGWPEW 404


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
 Frame = +2

Query: 236 ETKVADYDEVVKAISNNNILLIDVREPDEVKD------HGHIPNSINIPLGTI-STVLGE 394
           ++ +  YD+V+     +N  ++D +  DE         +GHI  + NIP+  +    +G+
Sbjct: 289 DSVIITYDDVLLNSEIDNFDVVDAQTKDEFLGTAQGALYGHIKGARNIPVDAVYDWAVGQ 348

Query: 395 MSDKEFNK-TYKRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEW 562
             D +  K  +     +    +I YC    RSA    +    G+ N K Y G W EW
Sbjct: 349 WKDADHLKGLFNNNALSLRKPVIIYCSTSLRSAMVWWALTRSGY-NGKIYFGGWPEW 404


>U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical
           protein R08E3.4a protein.
          Length = 447

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 164 SSNEYKAIPQLNALSLRLYSESKVET-KVADYDEVVKAISNNNILL 298
           S +E    P  N  SL L  + K  T +  D + VV  I+NNN+LL
Sbjct: 386 SPSEQSHSPPANESSLSLTEKEKSPTPEKEDEENVVCVIANNNLLL 431


>U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical
           protein M02D8.5 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 LSLRLYSESKVETKVADYDEVVKAISNNNILLIDVREPDEVKDHG 337
           LS   Y + K +T  ++  + +K  S  N LL+D   PD   D+G
Sbjct: 589 LSWSSYDDIKQKTSYSNAKKSLKYASCGNKLLVDYTSPDGGPDNG 633


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,919,229
Number of Sequences: 27780
Number of extensions: 232461
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)