Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k07
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1010 - 23276442-23276681,23277022-23277267                       27   3.6  
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    27   3.6  
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    26   8.3  

>07_03_1010 - 23276442-23276681,23277022-23277267
          Length = 161

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 177 WTIXTLSHHPSPASEE 224
           W I T+ H PSPA +E
Sbjct: 122 WIIKTMKHEPSPAQDE 137


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 177 WTIXTLSHHPSPASEE 224
           W I T+ H PSPA +E
Sbjct: 156 WIIKTMKHEPSPAQDE 171


>09_06_0055 -
           20550889-20551531,20551612-20551889,20552035-20552203,
           20552397-20552534,20553945-20553997,20554521-20554574,
           20556062-20556295,20556399-20556986,20557065-20557419,
           20557494-20557694,20557925-20557998,20558114-20558254,
           20558611-20558670,20558750-20558806,20559281-20559318,
           20559419-20559578
          Length = 1080

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 96  RYSWRESTLRHSQPLQADIVFHPICGLWTIXTLSHHPSPASEEVIQAAXI 245
           R  W+  TL H   L    + HP+   W +  L ++PS    E+  AA +
Sbjct: 562 RVLWKLGTLPHGL-LTFFKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVV 610


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,459,196
Number of Sequences: 37544
Number of extensions: 125362
Number of successful extensions: 220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)