Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k07
         (331 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VI...    50   1e-06
X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc ...    48   9e-06
BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase su...    48   9e-06
BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase su...    48   9e-06
BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase su...    48   9e-06
AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase su...    48   9e-06

>AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VIIc
           protein.
          Length = 63

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = +1

Query: 55  RNVVTNFVRXHSNGGIPGENLPFDIXNRYKLTLYFILYAGSGLSAPYLITRHQ 213
           R   T+ VR       PG+NLPF + N+++L     +Y GSG +AP+ I RHQ
Sbjct: 7   RRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTVYFGSGFAAPFFIVRHQ 59


>X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc
           gene for subunit VIIc of cytochrome c oxidase (EC
           1.9.3.1).  ).
          Length = 63

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +1

Query: 55  RNVVTNFVRXHSNGGIPGENLPFDIXNRYKLTLYFILYAGSGLSAPYLITRHQ 213
           R   T+ VR       PG+NLPF + N++ L     LY GS  + P+L+ RHQ
Sbjct: 7   RRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQ 59


>BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +1

Query: 55  RNVVTNFVRXHSNGGIPGENLPFDIXNRYKLTLYFILYAGSGLSAPYLITRHQ 213
           R   T+ VR       PG+NLPF + N++ L     LY GS  + P+L+ RHQ
Sbjct: 7   RRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQ 59


>BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +1

Query: 55  RNVVTNFVRXHSNGGIPGENLPFDIXNRYKLTLYFILYAGSGLSAPYLITRHQ 213
           R   T+ VR       PG+NLPF + N++ L     LY GS  + P+L+ RHQ
Sbjct: 7   RRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQ 59


>BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +1

Query: 55  RNVVTNFVRXHSNGGIPGENLPFDIXNRYKLTLYFILYAGSGLSAPYLITRHQ 213
           R   T+ VR       PG+NLPF + N++ L     LY GS  + P+L+ RHQ
Sbjct: 7   RRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQ 59


>AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc precursor protein.
          Length = 63

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +1

Query: 55  RNVVTNFVRXHSNGGIPGENLPFDIXNRYKLTLYFILYAGSGLSAPYLITRHQ 213
           R   T+ VR       PG+NLPF + N++ L     LY GS  + P+L+ RHQ
Sbjct: 7   RRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQ 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,483,232
Number of Sequences: 237096
Number of extensions: 682903
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)