Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k06
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 32 0.067
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros... 32 0.088
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 27 3.3
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 27 3.3
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 3.3
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 27 3.3
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 26 4.4
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 26 5.8
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 25 7.7
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 32.3 bits (70), Expect = 0.067
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 235 LKPEVVKGFVNMVQFGLLPRGEIFTLYVDRQLKETVTMFYMLYYAKDFATFIKTACWMR- 411
L VV+ FVN QF + E+ + +Q T + Y + +DFAT + + M+
Sbjct: 217 LTTRVVEVFVNNYQFSIDGNKEVLLAEIPKQYIVTGNLLYRVLELEDFATQMDASIVMKN 276
Query: 412 --LNVNEGMFVY 441
+ +NE M Y
Sbjct: 277 ELIALNEHMLTY 288
>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
protein phosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 156
Score = 31.9 bits (69), Expect = 0.088
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +3
Query: 129 DARYEAAQS-GDGASYVQGNRRDRQKFQV*RQQGLFLKTRSRE----GFREHGPIWPLTS 293
+AR++ S G GA +V GNR D + +V ++ G+ K +R+ F+ I+ + S
Sbjct: 35 EARFDTIDSCGTGAWHV-GNRPDPRTLEVLKKNGIHTKHLARKLSTSDFKNFDYIFAMDS 93
Query: 294 G*NIHSIRRPSTEGNRDNVL 353
N+ +I R +G+R V+
Sbjct: 94 S-NLRNINRVKPQGSRAKVM 112
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 435 KHPLVYIESHPAGGLNECGKVLCVIEHVEHC 343
KHPL + A CGK++C++E + C
Sbjct: 201 KHPL----NEAAPNCLNCGKIICIVEGIGPC 227
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 324 STEGNRDNVLHALLRKGLCHIH*DRLLDETQCKRG 428
+TE DN +H+ ++ LC ++L ++C RG
Sbjct: 47 NTELTIDNRIHSAIQMTLCDFERSQILAPSECVRG 81
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 99 LRFNGHVSETDARYEAAQSGD-GASYVQGNRRDRQKFQV*RQQGLFLKTRSREGFREHG 272
L FNG+ +E+ + SGD G+S Q + RD + S EG EHG
Sbjct: 222 LVFNGNANESQHNLKRMSSGDSGSSVKQQSTRDGPFSKSFPNGNGHASGNSGEGLAEHG 280
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Frame = -2
Query: 270 HVHETLHDFGF*ETILVVFKLETFADLFDFLV--------HNWLHHPIEQLHNE 133
+V++ L ++G+ + F + F DFL+ H WL+ P+ +LH++
Sbjct: 138 YVYDKLDEYGY---FYLFFSIALFLLFSDFLIYWIHRALHHRWLYAPLHKLHHK 188
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 431 IPSFTLSLIQQAVLMNVAKSFA 366
IPSF +SLI Q + N SF+
Sbjct: 480 IPSFNISLISQNAVANAGNSFS 501
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 6 VLATGCLHNEGYRGVGGWL 62
+ GCL EG RG GG+L
Sbjct: 293 IYGAGCLITEGCRGEGGYL 311
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 235 LKPEVVKGFVNMVQFGLLPRGEIFTLYVDRQLKETVTMFYMLYYAKD 375
L P + F+ +FGL+ + I TL V LKE +T+ + D
Sbjct: 282 LVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKEIITIIASTLFYHD 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,405
Number of Sequences: 5004
Number of extensions: 58363
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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